Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QBS15_RS16440 Genome accession   NZ_CP121842
Coordinates   3562581..3562901 (+) Length   106 a.a.
NCBI ID   WP_201911619.1    Uniprot ID   A0AAW5M5A3
Organism   Aeromonas veronii strain ANYA 16702     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3557581..3567901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS15_RS16425 yfbV 3558020..3558460 (-) 441 WP_201911617.1 terminus macrodomain insulation protein YfbV -
  QBS15_RS16430 - 3558765..3559967 (+) 1203 WP_005349210.1 acetate kinase -
  QBS15_RS16435 pta 3560022..3562202 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS15_RS16440 comEA/comE1 3562581..3562901 (+) 321 WP_201911619.1 ComEA family DNA-binding protein Machinery gene
  QBS15_RS16445 galU 3562998..3563909 (+) 912 WP_279461006.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS15_RS16450 - 3564123..3565520 (+) 1398 WP_279461007.1 peptide MFS transporter -
  QBS15_RS16455 - 3565595..3566566 (-) 972 WP_279461008.1 response regulator -
  QBS15_RS16460 - 3566807..3567505 (+) 699 WP_279461009.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11258.26 Da        Isoelectric Point: 9.9853

>NTDB_id=814614 QBS15_RS16440 WP_201911619.1 3562581..3562901(+) (comEA/comE1) [Aeromonas veronii strain ANYA 16702]
MLMKKLSAVMLLACLPLFSQPVLAADKAAPKQTTTTAVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814614 QBS15_RS16440 WP_201911619.1 3562581..3562901(+) (comEA/comE1) [Aeromonas veronii strain ANYA 16702]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACGACTGCGGTCGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTTAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGTCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

46.602

97.17

0.453
  comEA Vibrio cholerae C6706

46.602

97.17

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

44.33

91.509

0.406
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368
  comEA Vibrio campbellii strain DS40M4

37.143

99.057

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368