Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QBS06_RS24920 Genome accession   NZ_CP121798
Coordinates   5213875..5214195 (+) Length   106 a.a.
NCBI ID   WP_011707247.1    Uniprot ID   A0AAX0XL99
Organism   Aeromonas hydrophila strain YURI 17     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5208875..5219195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS06_RS24895 - 5209511..5210146 (-) 636 WP_041218190.1 hemolysin III family protein -
  QBS06_RS24900 - 5210371..5211876 (+) 1506 WP_041218191.1 aminotransferase class V-fold PLP-dependent enzyme -
  QBS06_RS24905 - 5211981..5212532 (+) 552 WP_024946223.1 septation protein A -
  QBS06_RS24910 - 5212558..5212854 (+) 297 WP_005309589.1 YciI family protein -
  QBS06_RS24915 cysQ 5212935..5213706 (-) 772 Protein_4695 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QBS06_RS24920 comEA 5213875..5214195 (+) 321 WP_011707247.1 ComEA family DNA-binding protein Machinery gene
  QBS06_RS24925 galU 5214291..5215202 (+) 912 WP_041218626.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS06_RS24930 - 5215416..5216813 (+) 1398 WP_041218625.1 peptide MFS transporter -
  QBS06_RS24935 - 5216888..5217859 (-) 972 WP_041218624.1 response regulator -
  QBS06_RS24940 - 5218199..5218876 (+) 678 WP_041218623.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11183.03 Da        Isoelectric Point: 9.5773

>NTDB_id=814296 QBS06_RS24920 WP_011707247.1 5213875..5214195(+) (comEA) [Aeromonas hydrophila strain YURI 17]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVTAAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814296 QBS06_RS24920 WP_011707247.1 5213875..5214195(+) (comEA) [Aeromonas hydrophila strain YURI 17]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACAGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTCAATACCGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAGAAGGCTCAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGCATCGGGCCAGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

53.636

100

0.557
  comEA Vibrio cholerae C6706

53.636

100

0.557
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

46.939

92.453

0.434
  comEA Legionella pneumophila strain ERS1305867

41.837

92.453

0.387
  comEA Legionella pneumophila str. Paris

41.837

92.453

0.387
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368