Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   P8P68_RS05780 Genome accession   NZ_CP121467
Coordinates   1201640..1203619 (-) Length   659 a.a.
NCBI ID   WP_070696075.1    Uniprot ID   A0AAX3TGU6
Organism   Streptococcus sp. D7B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196640..1208619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS05760 (P8P68_05760) amiF 1197135..1198064 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  P8P68_RS05765 (P8P68_05765) amiE 1198075..1199142 (-) 1068 WP_247931572.1 ABC transporter ATP-binding protein Regulator
  P8P68_RS05770 (P8P68_05770) amiD 1199151..1200077 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  P8P68_RS05775 (P8P68_05775) amiC 1200077..1201573 (-) 1497 WP_049520606.1 ABC transporter permease Regulator
  P8P68_RS05780 (P8P68_05780) amiA 1201640..1203619 (-) 1980 WP_070696075.1 peptide ABC transporter substrate-binding protein Regulator
  P8P68_RS05790 (P8P68_05790) - 1204121..1205452 (-) 1332 WP_070696073.1 hemolysin family protein -
  P8P68_RS05795 (P8P68_05795) endA 1205588..1206412 (-) 825 WP_000358998.1 DNA/RNA non-specific endonuclease Machinery gene
  P8P68_RS05800 (P8P68_05800) - 1206453..1206647 (-) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  P8P68_RS05805 (P8P68_05805) murA 1206634..1207917 (-) 1284 WP_278275754.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P8P68_RS05810 (P8P68_05810) - 1207941..1208171 (-) 231 WP_009013716.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72802.88 Da        Isoelectric Point: 4.8375

>NTDB_id=812224 P8P68_RS05780 WP_070696075.1 1201640..1203619(-) (amiA) [Streptococcus sp. D7B5]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAIYLAENSVKGLSDYLAGNTKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYAIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAYYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKENIFYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQVNGKEGAPRAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTAKNYIARIQSFKQSVETVLGEGNVVIDIQQVSKDE
FTNITYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLILPAMSSTGAAPFISRVVPFSASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=812224 P8P68_RS05780 WP_070696075.1 1201640..1203619(-) (amiA) [Streptococcus sp. D7B5]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGCGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATTCAGCTGACCCAGAAACTTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGATTGCCACTTCAAATGGTATCGATGGACTCTTCACAAACGACAAGTATGGGAATCTAGTCCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGACGGTTTGACTTATACCTACAAGATTCGTAAAGGAGTCAAATGGTTCAC
ATCTGACGGAGAAGAGTATGCTGAAGTGACAGCCAAAGACTTTGTAAATGGTTTGAAACACGCAGCTGATAAAAAATCAG
AAGCAATTTACCTAGCAGAAAATTCTGTTAAAGGATTGTCTGATTATTTAGCAGGTAATACAAAAGACTTTTCTTCAGTA
GGTGTAAAGGCAGTTGATGATTATACTCTTGAGTATACTTTGAACCAACCAGAACCATACTGGAACTCTAAGATGGCCTA
CGCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGACTTTGCTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAAAGGTTTGACTGCTAAGTCATCTATCGAGTTCGCTAAGAATGAAAACTACTGG
GATAAAGATAATGTTCATATTGATAAAGTAACCCTTGCTTACTATGATGGTTCAGACCAAGAGTCAATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTTTACCCAACAAGTTCAAACTACTCTAAAGTAGAAGAAACCTACAAGGAAA
ATATCTTCTACACCCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGCCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTCCTTAACAAGGACTTCCGTCAAGCCTTGAACTTTGCCTT
TGACCGTACGTCTTACTCAGCTCAAGTAAATGGTAAAGAAGGTGCTCCTCGTGCCGTTCGTAACCTCTTTGTAAAACCTG
ACTTTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTGCTTACGGTGATGAGTGGAAGAAT
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTAAAATTCCCTATCCATTTGGATGTTCCAGTAGACCAAACAGCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTGCTTGGAGAAGGCAATGTAGTCATCGATATCCAACAAGTTTCTAAAGATGAG
TTTACTAATATTACCTACTATGCGGCGAATGCAGCAGCAGAAGACTGGGATCTCTCAGGTGCCGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAGACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCGGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAAGAAACAAGC
GACTTGAATGTTCGTTATGAAAAATACGCAGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCATCTTGCCAGCTATGTC
ATCAACTGGTGCTGCACCATTCATTTCTCGTGTTGTGCCATTCTCTGCATCATATAGCCAATCTGGAGACAAAGGCTCAG
ATGTATACTTCAAGTATATTCAGTTACAAGACAAGGTTGTAACCAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.678

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675
  amiA3 Streptococcus thermophilus LMG 18311

67.273

100

0.674