Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   P8P68_RS05770 Genome accession   NZ_CP121467
Coordinates   1199151..1200077 (-) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus sp. D7B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194151..1205077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS05750 (P8P68_05750) trkA 1194254..1195603 (+) 1350 WP_139658308.1 Trk system potassium transporter TrkA -
  P8P68_RS05755 (P8P68_05755) - 1195607..1197046 (+) 1440 WP_247931571.1 TrkH family potassium uptake protein -
  P8P68_RS05760 (P8P68_05760) amiF 1197135..1198064 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  P8P68_RS05765 (P8P68_05765) amiE 1198075..1199142 (-) 1068 WP_247931572.1 ABC transporter ATP-binding protein Regulator
  P8P68_RS05770 (P8P68_05770) amiD 1199151..1200077 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  P8P68_RS05775 (P8P68_05775) amiC 1200077..1201573 (-) 1497 WP_049520606.1 ABC transporter permease Regulator
  P8P68_RS05780 (P8P68_05780) amiA 1201640..1203619 (-) 1980 WP_070696075.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=812222 P8P68_RS05770 WP_000103692.1 1199151..1200077(-) (amiD) [Streptococcus sp. D7B5]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=812222 P8P68_RS05770 WP_000103692.1 1199151..1200077(-) (amiD) [Streptococcus sp. D7B5]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACCGTCTTTATGCTAGGAATTTTGGTTGCTATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCAACTTTTATCAACCTTGTAATTGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAATTTGATTTTTGCAATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCACAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818