Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   P8P68_RS05775 Genome accession   NZ_CP121467
Coordinates   1200077..1201573 (-) Length   498 a.a.
NCBI ID   WP_049520606.1    Uniprot ID   A0AAW5W8Z5
Organism   Streptococcus sp. D7B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195077..1206573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS05755 (P8P68_05755) - 1195607..1197046 (+) 1440 WP_247931571.1 TrkH family potassium uptake protein -
  P8P68_RS05760 (P8P68_05760) amiF 1197135..1198064 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  P8P68_RS05765 (P8P68_05765) amiE 1198075..1199142 (-) 1068 WP_247931572.1 ABC transporter ATP-binding protein Regulator
  P8P68_RS05770 (P8P68_05770) amiD 1199151..1200077 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  P8P68_RS05775 (P8P68_05775) amiC 1200077..1201573 (-) 1497 WP_049520606.1 ABC transporter permease Regulator
  P8P68_RS05780 (P8P68_05780) amiA 1201640..1203619 (-) 1980 WP_070696075.1 peptide ABC transporter substrate-binding protein Regulator
  P8P68_RS05790 (P8P68_05790) - 1204121..1205452 (-) 1332 WP_070696073.1 hemolysin family protein -
  P8P68_RS05795 (P8P68_05795) endA 1205588..1206412 (-) 825 WP_000358998.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55728.12 Da        Isoelectric Point: 9.1190

>NTDB_id=812223 P8P68_RS05775 WP_049520606.1 1200077..1201573(-) (amiC) [Streptococcus sp. D7B5]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQERAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLIDIDHPNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=812223 P8P68_RS05775 WP_049520606.1 1200077..1201573(-) (amiC) [Streptococcus sp. D7B5]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACCTTGACCTACACAATTAT
CTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAACGGATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAGAGCGAGC
ACGATGGATTCGTCTGTAACAGTGGATGCCAATGATACCAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACACTCGGTGTGTTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCAATTTTTGAACGTGTTTTCA
AATTCTATGCCAACTTGATTGATATTGATCATCCAAACAAGATCCAGGACCCTGAAAATCCAAACTTGGAACGCTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGCTCAGGTACAAAACATAAATACCTTTTGTATTTCAACAA
TCAATTTCCATTTGTACACCAAAACTTTGTGAACATTAACTTGGGTGACTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAAGGTCAGGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCTGTA
GATATCTACTCTCGTACCTACAAATCTCCAAGTCAAGCAGATGCGCGTGAGGTAGCCAACTATGGTAAGGATGATCCATA
TACAGCTACAGAAAGCAATTACCAATACCCATCAATGATTGCAAGCTCAGCGGTTGCTGGTTTGATTGGTTTGATTATTT
CGTATGCGATTGCGATTCCACTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
CTAACCTTCTTGCTTGCCCTTCCAACGATTGCCTTGGTTTATATCGTGCGCTTGATTGGATCATCTATCGGTCTGCCAGA
TTCATTTCCTATCTTGGGAGCAGGGGACTGGCGTTCATATGTCTTGCCAGCAGTCATTCTAGGTTTGCTGGGTGCACCAA
GTACAGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAGGACTTCGTACGTTTTGCTCGTGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCCGTAAT
CGGAGTTATCGGTGGTGCAACATTGACAGAAACGGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAACAACTCAATGGTAGTTGGTCTTGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGTGAT
ATCTGGATGACCATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.707

100

0.767
  amiC Streptococcus thermophilus LMG 18311

76.104

100

0.761
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759