Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P8P68_RS05760 Genome accession   NZ_CP121467
Coordinates   1197135..1198064 (-) Length   309 a.a.
NCBI ID   WP_001291311.1    Uniprot ID   A0A291D7C0
Organism   Streptococcus sp. D7B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192135..1203064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS05740 (P8P68_05740) - 1192375..1192938 (-) 564 WP_000185840.1 ECF transporter S component -
  P8P68_RS05745 (P8P68_05745) - 1193351..1193854 (-) 504 WP_061409743.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  P8P68_RS05750 (P8P68_05750) trkA 1194254..1195603 (+) 1350 WP_139658308.1 Trk system potassium transporter TrkA -
  P8P68_RS05755 (P8P68_05755) - 1195607..1197046 (+) 1440 WP_247931571.1 TrkH family potassium uptake protein -
  P8P68_RS05760 (P8P68_05760) amiF 1197135..1198064 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  P8P68_RS05765 (P8P68_05765) amiE 1198075..1199142 (-) 1068 WP_247931572.1 ABC transporter ATP-binding protein Regulator
  P8P68_RS05770 (P8P68_05770) amiD 1199151..1200077 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  P8P68_RS05775 (P8P68_05775) amiC 1200077..1201573 (-) 1497 WP_049520606.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.25 Da        Isoelectric Point: 7.0424

>NTDB_id=812220 P8P68_RS05760 WP_001291311.1 1197135..1198064(-) (amiF) [Streptococcus sp. D7B5]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=812220 P8P68_RS05760 WP_001291311.1 1197135..1198064(-) (amiF) [Streptococcus sp. D7B5]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTTGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CTATTATTGGTCTAAATAATACCAGTAAAGGTGAAATCATCTTTGATGGTCATAAGATCAATGGAAAAAAATCTCATAAG
GAATCCTCAGACTTGATCCGTCGTATCCAGATGATTTTCCAAGACCCTGCAGCCAGCTTGAATGAACGTGCGACGGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGATGAAGAAGATCGTAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTACCCACACGAGTTTTCTGGTGGGCAACGTCAGCGTATCGGG
ATTGCCCGTGCTCTTGTGATGGAGCCTGATTTCGTTATTGCGGATGAGCCAATTTCTGCCTTGGACGTATCTGTTCGTGC
GCAAGTTTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCAGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATATACTCAGGCGCTTCTATCTGCGGTACCGATTCCAGATCCAATCTTAGAACGCAAGAAAGTCTT
GAAAGTTTACGACCCTGACCAACATGACTATGAGACAGACAAGCCGTCTATGGTGGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGATACAAAGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291D7C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

85.113

100

0.851
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838