Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   P8P68_RS05765 Genome accession   NZ_CP121467
Coordinates   1198075..1199142 (-) Length   355 a.a.
NCBI ID   WP_247931572.1    Uniprot ID   -
Organism   Streptococcus sp. D7B5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1193075..1204142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS05745 (P8P68_05745) - 1193351..1193854 (-) 504 WP_061409743.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  P8P68_RS05750 (P8P68_05750) trkA 1194254..1195603 (+) 1350 WP_139658308.1 Trk system potassium transporter TrkA -
  P8P68_RS05755 (P8P68_05755) - 1195607..1197046 (+) 1440 WP_247931571.1 TrkH family potassium uptake protein -
  P8P68_RS05760 (P8P68_05760) amiF 1197135..1198064 (-) 930 WP_001291311.1 ATP-binding cassette domain-containing protein Regulator
  P8P68_RS05765 (P8P68_05765) amiE 1198075..1199142 (-) 1068 WP_247931572.1 ABC transporter ATP-binding protein Regulator
  P8P68_RS05770 (P8P68_05770) amiD 1199151..1200077 (-) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  P8P68_RS05775 (P8P68_05775) amiC 1200077..1201573 (-) 1497 WP_049520606.1 ABC transporter permease Regulator
  P8P68_RS05780 (P8P68_05780) amiA 1201640..1203619 (-) 1980 WP_070696075.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39583.26 Da        Isoelectric Point: 4.6533

>NTDB_id=812221 P8P68_RS05765 WP_247931572.1 1198075..1199142(-) (amiE) [Streptococcus sp. D7B5]
MIKGKDVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQDL
TALTSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIVKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVSDTHWAK
TWLLHENAPKVEKPEVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=812221 P8P68_RS05765 WP_247931572.1 1198075..1199142(-) (amiE) [Streptococcus sp. D7B5]
ATGATAAAAGGAAAAGATGTAATTTTGACTGCTCGTGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTTCTAACGGC
TATCCGAGGAGTTTCTCTAGACTTGATTGAAGGAGAAGTTCTTGCCTTGGTAGGTGAGTCTGGTTCTGGTAAATCTGTTT
TAACAAAAACCTTTACAGGGATGTTAGAAGACAATGGACGTATTGCCCAAGGAAGCATCGACTATCGTGGACAAGACTTG
ACTGCTCTTACTTCTAACAAGGAATGGGAGAAAATTCGTGGTGCTAAAATTGCGACTATCTTCCAAGACCCTATGACAAG
TTTGGACCCAATCAATACAATCGGTAGCCAAATCACTGAAGTTATCGTTAAACACCAAGGGAAAACAGCTAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAGGTCGGAATCCCAGATGCTGAAAAACGTTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGGATGCGCCAACGTATCGTTATTGCGATTGCCCTTGCCTGTCGTCCAGATATCTTAATCTGTGACGAGCCGAC
AACGGCCCTTGATGTAACCATTCAAGCCCAAATCATTGATTTGCTTAAAACTTTACAAAATGAGTACCACTTTACCATTA
TCTTTATCACCCACGACCTTGGTGTGGTAGCAAGTATTGCCGATAAGGTAGCGGTTATGTATGCTGGTGAAATTGTAGAA
TACGGAACTGTTGAGGAAGTTTTCTACGACCCACGTCATCCATATACTTGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGACGATAAAGGGGAATTGTACTCTATCCCTGGAACACCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCGATGCAAATTGACTTTGAACAAAAAGCACCTCAGTTTTCAGTTAGTGATACCCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGAGGTCATCGCAGACTTGCATGACAAGATACGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.197

100

0.862

  amiE Streptococcus thermophilus LMG 18311

84.225

100

0.842

  amiE Streptococcus thermophilus LMD-9

84.225

100

0.842

  oppD Streptococcus mutans UA159

54.885

98.028

0.538