Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCUAC_RS16175 Genome accession   NZ_AP023077
Coordinates   3391996..3393222 (+) Length   408 a.a.
NCBI ID   WP_072689154.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3386996..3398222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS16140 rimP 3387661..3388185 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  OCUAC_RS16160 secG 3388827..3389156 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  OCUAC_RS16165 tpiA 3389169..3389963 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  OCUAC_RS16170 pilB 3390254..3391966 (+) 1713 WP_072689157.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCUAC_RS16175 pilC 3391996..3393222 (+) 1227 WP_072689154.1 type II secretion system F family protein Machinery gene
  OCUAC_RS20075 pilD 3393222..3394082 (+) 861 WP_001152277.1 A24 family peptidase Machinery gene
  OCUAC_RS16185 coaE 3394084..3394680 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  OCUAC_RS16190 - 3394677..3395591 (-) 915 WP_072689152.1 DMT family transporter -
  OCUAC_RS16195 rlmB 3395627..3396376 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCUAC_RS16200 - 3396478..3396804 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  OCUAC_RS16205 - 3396881..3398191 (-) 1311 WP_072689150.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44966.46 Da        Isoelectric Point: 9.9566

>NTDB_id=81186 OCUAC_RS16175 WP_072689154.1 3391996..3393222(+) (pilC) [Acinetobacter baumannii strain OCU_Ac16a]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAISEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=81186 OCUAC_RS16175 WP_072689154.1 3391996..3393222(+) (pilC) [Acinetobacter baumannii strain OCU_Ac16a]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTAGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404

Multiple sequence alignment