Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OCUAC_RS20075 Genome accession   NZ_AP023077
Coordinates   3393222..3394082 (+) Length   286 a.a.
NCBI ID   WP_001152277.1    Uniprot ID   A0A009HWK1
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3388222..3399082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS16160 secG 3388827..3389156 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  OCUAC_RS16165 tpiA 3389169..3389963 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  OCUAC_RS16170 pilB 3390254..3391966 (+) 1713 WP_072689157.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCUAC_RS16175 pilC 3391996..3393222 (+) 1227 WP_072689154.1 type II secretion system F family protein Machinery gene
  OCUAC_RS20075 pilD 3393222..3394082 (+) 861 WP_001152277.1 A24 family peptidase Machinery gene
  OCUAC_RS16185 coaE 3394084..3394680 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  OCUAC_RS16190 - 3394677..3395591 (-) 915 WP_072689152.1 DMT family transporter -
  OCUAC_RS16195 rlmB 3395627..3396376 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OCUAC_RS16200 - 3396478..3396804 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  OCUAC_RS16205 - 3396881..3398191 (-) 1311 WP_072689150.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32038.43 Da        Isoelectric Point: 7.1041

>NTDB_id=81194 OCUAC_RS20075 WP_001152277.1 3393222..3394082(+) (pilD) [Acinetobacter baumannii strain OCU_Ac16a]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=81194 OCUAC_RS20075 WP_001152277.1 3393222..3394082(+) (pilD) [Acinetobacter baumannii strain OCU_Ac16a]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment