Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RPM46_RS09920 Genome accession   NZ_CP135096
Coordinates   2144927..2146144 (-) Length   405 a.a.
NCBI ID   WP_003161763.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer3554     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139927..2151144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM46_RS09875 (RPM46_09875) - 2140111..2140560 (-) 450 WP_003094670.1 MOSC domain-containing protein -
  RPM46_RS09880 (RPM46_09880) - 2140557..2141186 (-) 630 WP_003094668.1 DUF1780 domain-containing protein -
  RPM46_RS09885 (RPM46_09885) - 2141319..2141744 (+) 426 WP_003161766.1 GNAT family N-acetyltransferase -
  RPM46_RS09890 (RPM46_09890) - 2141741..2142211 (+) 471 WP_003094664.1 hypothetical protein -
  RPM46_RS09895 (RPM46_09895) - 2142208..2142897 (+) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  RPM46_RS09900 (RPM46_09900) - 2143003..2143212 (+) 210 WP_020750398.1 hypothetical protein -
  RPM46_RS09905 (RPM46_09905) yacG 2143249..2143449 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  RPM46_RS09910 (RPM46_09910) coaE 2143446..2144057 (-) 612 WP_003094654.1 dephospho-CoA kinase -
  RPM46_RS09915 (RPM46_09915) pilD 2144054..2144926 (-) 873 WP_003161765.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  RPM46_RS09920 (RPM46_09920) pilC 2144927..2146144 (-) 1218 WP_003161763.1 type II secretion system F family protein Machinery gene
  RPM46_RS09925 (RPM46_09925) pilB 2146148..2147848 (-) 1701 WP_003122078.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RPM46_RS09930 (RPM46_09930) pilA/pilAI 2148079..2148546 (+) 468 WP_003161762.1 pilin Machinery gene
  RPM46_RS09935 (RPM46_09935) - 2148568..2150016 (+) 1449 WP_238569791.1 O-antigen ligase family protein -
  RPM46_RS09945 (RPM46_09945) nadC 2150197..2151045 (-) 849 WP_003161760.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43998.80 Da        Isoelectric Point: 9.8103

>NTDB_id=809417 RPM46_RS09920 WP_003161763.1 2144927..2146144(-) (pilC) [Pseudomonas aeruginosa strain Paer3554]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=809417 RPM46_RS09920 WP_003161763.1 2144927..2146144(-) (pilC) [Pseudomonas aeruginosa strain Paer3554]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTTGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAGTCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baylyi ADP1

61.275

100

0.617
  pilC Acinetobacter baumannii D1279779

60.644

99.753

0.605
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.287

99.753

0.462
  pilG Neisseria meningitidis 44/76-A

45.771

99.259

0.454
  pilC Vibrio cholerae strain A1552

41.728

100

0.417
  pilC Vibrio campbellii strain DS40M4

40.898

99.012

0.405
  pilC Thermus thermophilus HB27

38.155

99.012

0.378