Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LLHP_RS06475 Genome accession   NZ_CP120921
Coordinates   1292189..1292839 (+) Length   216 a.a.
NCBI ID   WP_032951095.1    Uniprot ID   A0A1V0PHJ5
Organism   Lactococcus cremoris subsp. cremoris HP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1287189..1297839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLHP_RS06445 (LLHP_06475) - 1287500..1288519 (-) 1020 WP_032951092.1 DUF475 domain-containing protein -
  LLHP_RS06450 (LLHP_06480) - 1288585..1289085 (-) 501 WP_032951093.1 VanZ family protein -
  LLHP_RS06455 (LLHP_06485) - 1289127..1289762 (-) 636 WP_011676097.1 YigZ family protein -
  LLHP_RS06460 (LLHP_06490) comFA 1289819..1290604 (+) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  LLHP_RS06465 (LLHP_06495) - 1290702..1291637 (-) 936 WP_031559015.1 IS30 family transposase -
  LLHP_RS06470 (LLHP_06500) comFA 1291773..1292189 (+) 417 WP_257589739.1 helicase-related protein Machinery gene
  LLHP_RS06475 (LLHP_06505) comFC 1292189..1292839 (+) 651 WP_032951095.1 ComF family protein Machinery gene
  LLHP_RS06480 (LLHP_06510) - 1292897..1293475 (-) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLHP_RS06485 (LLHP_06515) - 1293492..1293947 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLHP_RS06490 (LLHP_06520) ybeY 1293931..1294419 (-) 489 WP_032951096.1 rRNA maturation RNase YbeY -
  LLHP_RS06495 (LLHP_06525) - 1294510..1295004 (-) 495 WP_011676092.1 NUDIX hydrolase -
  LLHP_RS06500 (LLHP_06530) - 1295074..1296042 (-) 969 WP_021165232.1 PhoH family protein -
  LLHP_RS06505 (LLHP_06535) - 1296116..1297648 (-) 1533 WP_015082368.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25214.49 Da        Isoelectric Point: 9.8562

>NTDB_id=809338 LLHP_RS06475 WP_032951095.1 1292189..1292839(+) (comFC) [Lactococcus cremoris subsp. cremoris HP]
MQTCLLCSRIIKQTLTFSEFFLLKNNRNLICNKCQSLFKKIPNERCPRCSKANSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLDLLEKEDTVRQSSLNRE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=809338 LLHP_RS06475 WP_032951095.1 1292189..1292839(+) (comFC) [Lactococcus cremoris subsp. cremoris HP]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAACAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAAGCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGACAATCAAGTCTTAATCGCGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTTTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PHJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

98.507

62.037

0.611
  comFC/cflB Streptococcus mitis NCTC 12261

49.541

100

0.5
  comFC/cflB Streptococcus pneumoniae Rx1

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae D39

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae R6

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

100

0.477
  comFC/cflB Streptococcus mitis SK321

47.248

100

0.477
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366