Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LLHP_RS06470 Genome accession   NZ_CP120921
Coordinates   1291773..1292189 (+) Length   138 a.a.
NCBI ID   WP_257589739.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris HP     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1286773..1297189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLHP_RS06445 (LLHP_06475) - 1287500..1288519 (-) 1020 WP_032951092.1 DUF475 domain-containing protein -
  LLHP_RS06450 (LLHP_06480) - 1288585..1289085 (-) 501 WP_032951093.1 VanZ family protein -
  LLHP_RS06455 (LLHP_06485) - 1289127..1289762 (-) 636 WP_011676097.1 YigZ family protein -
  LLHP_RS06460 (LLHP_06490) comFA 1289819..1290604 (+) 786 WP_021214114.1 DEAD/DEAH box helicase family protein Machinery gene
  LLHP_RS06465 (LLHP_06495) - 1290702..1291637 (-) 936 WP_031559015.1 IS30 family transposase -
  LLHP_RS06470 (LLHP_06500) comFA 1291773..1292189 (+) 417 WP_257589739.1 helicase-related protein Machinery gene
  LLHP_RS06475 (LLHP_06505) comFC 1292189..1292839 (+) 651 WP_032951095.1 ComF family protein Machinery gene
  LLHP_RS06480 (LLHP_06510) - 1292897..1293475 (-) 579 WP_011676095.1 nucleotidyltransferase family protein -
  LLHP_RS06485 (LLHP_06515) - 1293492..1293947 (-) 456 WP_011676094.1 diacylglycerol kinase family protein -
  LLHP_RS06490 (LLHP_06520) ybeY 1293931..1294419 (-) 489 WP_032951096.1 rRNA maturation RNase YbeY -
  LLHP_RS06495 (LLHP_06525) - 1294510..1295004 (-) 495 WP_011676092.1 NUDIX hydrolase -
  LLHP_RS06500 (LLHP_06530) - 1295074..1296042 (-) 969 WP_021165232.1 PhoH family protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15494.15 Da        Isoelectric Point: 10.8911

>NTDB_id=809337 LLHP_RS06470 WP_257589739.1 1291773..1292189(+) (comFA) [Lactococcus cremoris subsp. cremoris HP]
MEQRKTGFPLLIFVAEIDFGQDFAKNLQEKFPKEKMAFVASTTKSKKTIVEAFRKKQVSILITTSILERGVTFSSIDVFV
INSEHPNFTKSALIQMAGRVGRDSKRPTGLVSFFHSGKSLAMCQAQKEIKKMNRLGGF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=809337 LLHP_RS06470 WP_257589739.1 1291773..1292189(+) (comFA) [Lactococcus cremoris subsp. cremoris HP]
ATTGAGCAAAGAAAGACTGGTTTCCCACTTCTAATTTTCGTTGCCGAAATCGACTTTGGTCAAGACTTTGCCAAAAATTT
ACAAGAAAAATTTCCAAAAGAAAAAATGGCTTTTGTCGCTTCAACAACTAAAAGCAAAAAAACGATTGTCGAAGCTTTTC
GCAAGAAACAAGTTTCGATTTTAATTACGACTTCTATTCTTGAACGAGGCGTAACTTTTTCTTCGATTGATGTTTTTGTC
ATTAATAGCGAACACCCTAATTTCACAAAATCTGCCCTCATTCAAATGGCCGGACGAGTGGGACGCGACTCTAAACGTCC
AACAGGTTTAGTTAGTTTTTTTCACTCTGGAAAATCTTTAGCCATGTGTCAAGCTCAGAAAGAAATTAAAAAAATGAACC
GACTCGGAGGTTTTTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(4-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

98.551

100

0.986
  comFA/cflA Streptococcus pneumoniae TIGR4

52.555

99.275

0.522
  comFA/cflA Streptococcus pneumoniae Rx1

52.555

99.275

0.522
  comFA/cflA Streptococcus pneumoniae D39

52.555

99.275

0.522
  comFA/cflA Streptococcus pneumoniae R6

52.555

99.275

0.522
  comFA/cflA Streptococcus mitis SK321

51.825

99.275

0.514
  comFA/cflA Streptococcus mitis NCTC 12261

51.825

99.275

0.514
  comFA Bacillus subtilis subsp. subtilis str. 168

39.85

96.377

0.384