Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RPM48_RS22655 Genome accession   NZ_CP135095
Coordinates   4852028..4852552 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4847028..4857552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS22640 (RPM48_22640) aroB 4848144..4849250 (-) 1107 WP_003095831.1 3-dehydroquinate synthase -
  RPM48_RS22645 (RPM48_22645) aroK 4849300..4849818 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RPM48_RS22650 (RPM48_22650) pilQ 4849830..4851974 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  RPM48_RS22655 (RPM48_22655) comL/pilP 4852028..4852552 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RPM48_RS22660 (RPM48_22660) pilO 4852549..4853172 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  RPM48_RS22665 (RPM48_22665) pilN 4853169..4853765 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RPM48_RS22670 (RPM48_22670) pilM 4853765..4854829 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RPM48_RS22675 (RPM48_22675) - 4855014..4857485 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=809332 RPM48_RS22655 WP_003095836.1 4852028..4852552(-) (comL/pilP) [Pseudomonas aeruginosa strain Paer3771]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=809332 RPM48_RS22655 WP_003095836.1 4852028..4852552(-) (comL/pilP) [Pseudomonas aeruginosa strain Paer3771]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362