Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P3T49_RS09310 Genome accession   NZ_CP120723
Coordinates   1807002..1808252 (+) Length   416 a.a.
NCBI ID   WP_010788650.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1802002..1813252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS09280 yfmH 1802085..1803371 (+) 1287 WP_061670800.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  P3T49_RS09285 ymfI 1803428..1804156 (+) 729 WP_010788647.1 elongation factor P 5-aminopentanone reductase -
  P3T49_RS09290 - 1804237..1804494 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  P3T49_RS09295 - 1804624..1805415 (+) 792 WP_003328872.1 DUF3388 domain-containing protein -
  P3T49_RS09300 rodZ 1805434..1806351 (+) 918 WP_010788648.1 cell shape determination protein RodZ -
  P3T49_RS09305 pgsA 1806402..1806983 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3T49_RS09310 cinA 1807002..1808252 (+) 1251 WP_010788650.1 competence/damage-inducible protein A Machinery gene
  P3T49_RS09315 recA 1808423..1809466 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  P3T49_RS09320 - 1809752..1810981 (+) 1230 WP_010788653.1 serine hydrolase domain-containing protein -
  P3T49_RS09325 rny 1811240..1812802 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45198.46 Da        Isoelectric Point: 4.8535

>NTDB_id=808360 P3T49_RS09310 WP_010788650.1 1807002..1808252(+) (cinA) [Bacillus atrophaeus strain NX-12]
MELGKKAEIIAVGSELLLGQITNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=808360 P3T49_RS09310 WP_010788650.1 1807002..1808252(+) (cinA) [Bacillus atrophaeus strain NX-12]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCACCAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTTGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACTAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTCAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.183

100

0.892
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382