Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RKE30_RS34510 Genome accession   NZ_CP134875
Coordinates   7905050..7905667 (-) Length   205 a.a.
NCBI ID   WP_313748237.1    Uniprot ID   -
Organism   Streptomyces sp. Li-HN-5-11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7900050..7910667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RKE30_RS34495 (RKE30_34495) - 7901714..7902709 (+) 996 WP_313748233.1 hypothetical protein -
  RKE30_RS34500 (RKE30_34500) clpX 7902785..7904071 (-) 1287 WP_313748234.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RKE30_RS34505 (RKE30_34505) clpP 7904241..7904921 (-) 681 WP_313748236.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RKE30_RS34510 (RKE30_34510) clpP 7905050..7905667 (-) 618 WP_313748237.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RKE30_RS34515 (RKE30_34515) tig 7906001..7907404 (-) 1404 WP_313748238.1 trigger factor -
  RKE30_RS34530 (RKE30_34530) - 7908053..7909222 (-) 1170 WP_313748239.1 site-specific integrase -
  RKE30_RS34535 (RKE30_34535) - 7909222..7909434 (-) 213 WP_313748240.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21780.71 Da        Isoelectric Point: 4.8122

>NTDB_id=808265 RKE30_RS34510 WP_313748237.1 7905050..7905667(-) (clpP) [Streptomyces sp. Li-HN-5-11]
MTNLMPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANRITAQLLLLAADPDKDINLYINSPGGSITAGMAIYD
TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTG
QTVEQITRDSDRDRWFDAYEAKEYGLIDDVITHAASMPGAGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=808265 RKE30_RS34510 WP_313748237.1 7905050..7905667(-) (clpP) [Streptomyces sp. Li-HN-5-11]
GTGACGAATCTGATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTATACAACCGGCTGCT
CGGCGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAGGATCACCGCGCAGCTGCTGCTCCTTG
CCGCGGACCCGGACAAGGACATCAACCTTTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGAC
ACGATGCAGTTCATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCCGCCTCGATGGGTCAGTTCCTGCTCAGCGC
GGGCACGCCCGGCAAGCGTTTCGCGCTGCCGAACGCCGAGATCCTGATTCACCAGCCCTCCGCGGGCCTGGCCGGCTCGG
CCTCGGACATCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTCACCTCTCAGCACACCGGC
CAGACGGTCGAGCAGATCACCCGCGACTCGGACCGCGACCGGTGGTTCGACGCCTACGAGGCCAAGGAGTACGGCCTCAT
CGACGACGTCATCACGCATGCGGCGAGCATGCCGGGCGCCGGCGGCACTGGAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.25

93.659

0.527
  clpP Lactococcus lactis subsp. cremoris KW2

51.531

95.61

0.493
  clpP Streptococcus mutans UA159

51.546

94.634

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.02

95.61

0.488
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.973

90.244

0.478
  clpP Streptococcus pyogenes MGAS315

52.601

84.39

0.444
  clpP Streptococcus pyogenes JRS4

52.601

84.39

0.444
  clpP Streptococcus thermophilus LMG 18311

51.429

85.366

0.439
  clpP Streptococcus thermophilus LMD-9

51.429

85.366

0.439
  clpP Streptococcus pneumoniae Rx1

50.286

85.366

0.429
  clpP Streptococcus pneumoniae D39

50.286

85.366

0.429
  clpP Streptococcus pneumoniae R6

50.286

85.366

0.429
  clpP Streptococcus pneumoniae TIGR4

50.286

85.366

0.429