Detailed information NTG0808263

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RKE30_RS34500
• Genome accession: NZ_CP134875
• Coordinates: 7902785..7904071 (-)
• Length: 428 a.a.
• NCBI ID: WP_313748234.1
• Uniprot ID: -
• Organism: Streptomyces sp. Li-HN-5-11
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 7897785..7909071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKE30_RS34485 (RKE30_34485)	-	7898160..7898789 (-)	630	WP_313748231.1	Uma2 family endonuclease	-
RKE30_RS34490 (RKE30_34490)	-	7898947..7901577 (-)	2631	WP_313748232.1	valine--tRNA ligase	-
RKE30_RS34495 (RKE30_34495)	-	7901714..7902709 (+)	996	WP_313748233.1	hypothetical protein	-
RKE30_RS34500 (RKE30_34500)	clpX	7902785..7904071 (-)	1287	WP_313748234.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RKE30_RS34505 (RKE30_34505)	clpP	7904241..7904921 (-)	681	WP_313748236.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RKE30_RS34510 (RKE30_34510)	clpP	7905050..7905667 (-)	618	WP_313748237.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RKE30_RS34515 (RKE30_34515)	tig	7906001..7907404 (-)	1404	WP_313748238.1	trigger factor	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46764.61 Da
• Isoelectric Point: 4.8306

>NTDB_id=808263 RKE30_RS34500 WP_313748234.1 7902785..7904071(-) (clpX) [Streptomyces sp. Li-HN-5-11]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLDGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGRDDGIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIEGRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLKILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDARGRGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=808263 RKE30_RS34500 WP_313748234.1 7902785..7904071(-) (clpX) [Streptomyces sp. Li-HN-5-11]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTCTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACCA
GCGAGGTGCGCTGGGAGGAGCTGCCCAAGCCCCGCGAGATCTACGAGTTCCTGGACGGGTACGTCGTCGGCCAGGAGGCC
GCGAAGAAGGCCCTGTCCGTGGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGTGAGAACGGCGGCGCGCAGGGCCG
CGACGACGGCATCGAGCTCGCCAAGTCGAACATCCTCCTGCTCGGCCCCACGGGCTCCGGCAAGACCCTGCTGGCCCAGA
CCCTGGCCCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACCGCGCTGACGGAGGCCGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTAGCCCGAAAGAGCGAAAACCCGTCGATCACCCGCGATGTGTCGGGCGAGGGCGTCCAGCAGGCCC
TGCTGAAGATCCTCGAGGGCACCACCGCCTCGGTCCCGCCGCAGGGCGGCCGCAAACACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGTGCCTTCGCCGGACTGGAGAAGATCATCGAGGGCCGTGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGCGAGCTGGAGGCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTGAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTGCCCGTCATCACCTCGGTCCACAACCTCGACCGC
GAAGCACTCCTGAAGATCCTCGTCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGTCTGTTCGAACTCGACGGTGT
GGAACTGGACTTCGAGCGTGAGGCCCTCGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
GCGGACGTCGTCCACTCCAACGTCAACCCGACCCTGATCCCGCGCGACGCGCGCGGCCGCGGCCCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.184	93.925	0.593
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.988	96.028	0.528