Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P6910_RS17870 Genome accession   NZ_CP120717
Coordinates   5208046..5209263 (+) Length   405 a.a.
NCBI ID   WP_317142607.1    Uniprot ID   A0AA97G8I6
Organism   Endozoicomonas sp. 8E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5203046..5214263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6910_RS17850 (P6910_17845) pdxA 5203258..5204241 (+) 984 WP_317142603.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  P6910_RS17855 (P6910_17850) rsmA 5204596..5205402 (+) 807 WP_317142604.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  P6910_RS17860 (P6910_17855) - 5205752..5206570 (+) 819 WP_317142605.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  P6910_RS17865 (P6910_17860) - 5206607..5207656 (-) 1050 WP_317142606.1 hypothetical protein -
  P6910_RS17870 (P6910_17865) pilC 5208046..5209263 (+) 1218 WP_317142607.1 type II secretion system F family protein Machinery gene
  P6910_RS17875 (P6910_17870) - 5209312..5209644 (+) 333 WP_317142608.1 hypothetical protein -
  P6910_RS26900 - 5209800..5210153 (+) 354 WP_410493941.1 type II toxin-antitoxin system RelE/ParE family toxin -
  P6910_RS17880 (P6910_17875) - 5210086..5210391 (+) 306 WP_317142609.1 HigA family addiction module antitoxin -
  P6910_RS17885 (P6910_17880) - 5210529..5210903 (-) 375 WP_317142610.1 hypothetical protein -
  P6910_RS17890 (P6910_17885) - 5210893..5211159 (-) 267 WP_317142611.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  P6910_RS17895 (P6910_17890) - 5211566..5212456 (-) 891 WP_317142612.1 LysR family transcriptional regulator -
  P6910_RS17900 (P6910_17895) - 5212559..5213845 (+) 1287 WP_317142613.1 serine hydrolase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43683.34 Da        Isoelectric Point: 9.7769

>NTDB_id=808249 P6910_RS17870 WP_317142607.1 5208046..5209263(+) (pilC) [Endozoicomonas sp. 8E]
MARKPTKTATFVWEGKDKSGRKVKGEIQSGSIALVKAELRKQGISATKVRKKGMSLGTKGGKIRPMDIALFTRQLATMMK
AGVPLLQAFDITSDGIEKPAMKDLIGKVKNDVAGGSTLADALRNHPIHFDDLYCNLVASGEQSGSLESLLDRIATYKEKT
EALKAKIKKAMKYPIAVVGVAMIVTGILLVYVVPQFEEVFQGFGAELPAFTQLVIGISEVVQSSWHMAIAALVAFGFLFR
KLLQKSKATRDRMDRITLKIPVIGVILDKSAVARFARTLSTTFAAGVPLVDALDSVAGAAGNIVYFDATRQIKEDVSNGQ
QLQFAMRNSGIFPAMAVQMVSIGEESGALDEMLDKVATFYEDEVDNMVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=808249 P6910_RS17870 WP_317142607.1 5208046..5209263(+) (pilC) [Endozoicomonas sp. 8E]
ATGGCACGAAAACCAACAAAAACAGCCACATTCGTCTGGGAAGGTAAAGACAAGAGTGGACGGAAGGTCAAGGGAGAAAT
CCAGAGTGGTAGCATTGCCCTGGTCAAGGCCGAACTCCGTAAGCAGGGAATCAGCGCCACAAAAGTCAGAAAAAAAGGTA
TGTCGCTGGGCACAAAGGGCGGCAAGATCAGGCCCATGGACATTGCCCTGTTTACCCGCCAGCTCGCTACCATGATGAAA
GCAGGTGTCCCCCTGCTTCAGGCTTTTGATATCACCTCTGACGGTATCGAAAAGCCTGCCATGAAAGATCTCATTGGCAA
AGTGAAGAATGATGTTGCCGGTGGTTCCACCTTGGCCGACGCCCTGAGAAACCACCCAATTCATTTTGATGACCTCTATT
GCAATCTGGTCGCTTCGGGTGAACAGTCAGGCTCTCTGGAGTCACTGCTGGACAGAATCGCCACCTATAAAGAAAAGACC
GAGGCCCTCAAGGCAAAAATCAAAAAAGCAATGAAATACCCCATCGCAGTTGTGGGTGTTGCAATGATCGTAACCGGTAT
TCTGCTGGTTTATGTAGTACCCCAGTTTGAAGAAGTATTCCAGGGCTTCGGAGCCGAACTGCCCGCCTTTACCCAGCTGG
TTATCGGTATCTCTGAAGTAGTTCAGAGTTCATGGCATATGGCGATAGCCGCTCTTGTTGCCTTTGGATTCCTATTCAGG
AAACTGTTGCAGAAGTCCAAAGCCACCAGAGACAGAATGGATCGAATCACCCTTAAAATCCCGGTGATCGGTGTCATTCT
TGATAAATCAGCGGTAGCCCGATTTGCCAGAACTTTATCGACGACGTTTGCCGCCGGTGTCCCCCTGGTGGATGCCCTGG
ATTCGGTTGCCGGTGCTGCGGGTAACATCGTCTATTTTGATGCTACCCGACAGATCAAGGAAGACGTATCCAACGGTCAG
CAACTACAATTTGCCATGAGAAACTCCGGCATATTCCCTGCCATGGCCGTCCAGATGGTGTCGATTGGTGAAGAATCCGG
CGCTCTGGATGAAATGCTCGATAAGGTCGCTACCTTTTACGAAGACGAAGTCGACAACATGGTAGATGGACTGACCAGTT
TGATGGAACCTTTGATCATGTCGGTTCTTGGTGTGCTGGTTGGTGGTCTTATTATTGCAATGTACTTGCCTATCTTCCAG
TTGGGGTCTGTGGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.395

100

0.684
  pilC Acinetobacter baylyi ADP1

58.374

100

0.585
  pilC Acinetobacter baumannii D1279779

57.778

100

0.578
  pilC Legionella pneumophila strain ERS1305867

56.892

98.519

0.56
  pilG Neisseria gonorrhoeae MS11

46.517

99.259

0.462
  pilG Neisseria meningitidis 44/76-A

46.25

98.765

0.457
  pilC Vibrio cholerae strain A1552

44.11

98.519

0.435
  pilC Vibrio campbellii strain DS40M4

42.714

98.272

0.42
  pilC Thermus thermophilus HB27

37.5

98.765

0.37