Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   P0M29_RS10230 Genome accession   NZ_CP120711
Coordinates   2004874..2005563 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain 12Y     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1999874..2010563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M29_RS10195 (P0M29_10195) fliW 1999965..2000396 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  P0M29_RS10200 (P0M29_10200) - 2000426..2000995 (-) 570 WP_003151397.1 DUF6470 family protein -
  P0M29_RS10205 (P0M29_10205) flgL 2001086..2002003 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  P0M29_RS10210 (P0M29_10210) flgK 2002015..2003532 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  P0M29_RS10215 (P0M29_10215) - 2003548..2004030 (-) 483 WP_003151394.1 flagellar protein FlgN -
  P0M29_RS10220 (P0M29_10220) flgM 2004045..2004311 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  P0M29_RS10225 (P0M29_10225) - 2004381..2004800 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  P0M29_RS10230 (P0M29_10230) comFC 2004874..2005563 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  P0M29_RS10235 (P0M29_10235) - 2005569..2005853 (-) 285 WP_003151389.1 competence protein ComFB -
  P0M29_RS10240 (P0M29_10240) comFA 2005911..2007296 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  P0M29_RS10245 (P0M29_10245) - 2007404..2008252 (-) 849 WP_003151387.1 DegV family protein -
  P0M29_RS10250 (P0M29_10250) degU 2008350..2009039 (-) 690 WP_103042074.1 two-component system response regulator DegU Regulator
  P0M29_RS10255 (P0M29_10255) degS 2009116..2010279 (-) 1164 WP_103042075.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=808175 P0M29_RS10230 WP_199449054.1 2004874..2005563(-) (comFC) [Bacillus velezensis strain 12Y]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=808175 P0M29_RS10230 WP_199449054.1 2004874..2005563(-) (comFC) [Bacillus velezensis strain 12Y]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598