Detailed information NTG0807228

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: P5623_RS18055
• Genome accession: NZ_CP120625
• Coordinates: 3371326..3372012 (+)
• Length: 228 a.a.
• NCBI ID: WP_173408337.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain DSM 103869
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3366326..3377012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5623_RS18025 (P5623_18025)	degS	3366487..3367662 (+)	1176	WP_024719243.1	sensor histidine kinase	Regulator
P5623_RS18030 (P5623_18030)	degU	3367727..3368416 (+)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
P5623_RS18035 (P5623_18035)	-	3368629..3369471 (+)	843	WP_024719242.1	DegV family protein	-
P5623_RS18040 (P5623_18040)	comFA	3369843..3370550 (+)	708	WP_277687538.1	DEAD/DEAH box helicase family protein	Machinery gene
P5623_RS18045 (P5623_18045)	comFA	3370534..3370971 (+)	438	WP_277687539.1	helicase-related protein	Machinery gene
P5623_RS18050 (P5623_18050)	-	3371036..3371329 (+)	294	WP_008348267.1	competence protein ComFB	-
P5623_RS18055 (P5623_18055)	comFC	3371326..3372012 (+)	687	WP_173408337.1	ComF family protein	Machinery gene
P5623_RS18060 (P5623_18060)	-	3372069..3372488 (+)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
P5623_RS18065 (P5623_18065)	flgM	3372568..3372831 (+)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
P5623_RS18070 (P5623_18070)	-	3372850..3373332 (+)	483	WP_007499977.1	flagellar protein FlgN	-
P5623_RS18075 (P5623_18075)	flgK	3373348..3374868 (+)	1521	WP_017368142.1	flagellar hook-associated protein FlgK	-
P5623_RS18080 (P5623_18080)	flgL	3374877..3375788 (+)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
P5623_RS18085 (P5623_18085)	-	3375835..3376413 (+)	579	WP_041091473.1	DUF6470 family protein	-
P5623_RS18090 (P5623_18090)	fliW	3376442..3376876 (+)	435	WP_025208061.1	flagellar assembly protein FliW	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26102.59 Da
• Isoelectric Point: 10.1473

>NTDB_id=807228 P5623_RS18055 WP_173408337.1 3371326..3372012(+) (comFC) [Bacillus altitudinis strain DSM 103869]
MICPICESHFVAAFTWKSFLVLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWDKRRDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=807228 P5623_RS18055 WP_173408337.1 3371326..3372012(+) (comFC) [Bacillus altitudinis strain DSM 103869]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTAGTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCAGGATTGTTCAAGGTGGGATAAACGACGAGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.13	100	0.496
comFC/cflB	Streptococcus mitis SK321	37.991	100	0.382
comFC/cflB	Streptococcus mitis NCTC 12261	37.555	100	0.377
comFC/cflB	Streptococcus pneumoniae TIGR4	36.681	100	0.368
comFC/cflB	Streptococcus pneumoniae Rx1	36.681	100	0.368
comFC/cflB	Streptococcus pneumoniae D39	36.681	100	0.368
comFC/cflB	Streptococcus pneumoniae R6	36.681	100	0.368