Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   P5623_RS18045 Genome accession   NZ_CP120625
Coordinates   3370534..3370971 (+) Length   145 a.a.
NCBI ID   WP_277687539.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3365534..3375971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS18020 (P5623_18020) - 3365597..3366265 (-) 669 WP_017357860.1 YigZ family protein -
  P5623_RS18025 (P5623_18025) degS 3366487..3367662 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  P5623_RS18030 (P5623_18030) degU 3367727..3368416 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  P5623_RS18035 (P5623_18035) - 3368629..3369471 (+) 843 WP_024719242.1 DegV family protein -
  P5623_RS18040 (P5623_18040) comFA 3369843..3370550 (+) 708 WP_277687538.1 DEAD/DEAH box helicase family protein Machinery gene
  P5623_RS18045 (P5623_18045) comFA 3370534..3370971 (+) 438 WP_277687539.1 helicase-related protein Machinery gene
  P5623_RS18050 (P5623_18050) - 3371036..3371329 (+) 294 WP_008348267.1 competence protein ComFB -
  P5623_RS18055 (P5623_18055) comFC 3371326..3372012 (+) 687 WP_173408337.1 ComF family protein Machinery gene
  P5623_RS18060 (P5623_18060) - 3372069..3372488 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  P5623_RS18065 (P5623_18065) flgM 3372568..3372831 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5623_RS18070 (P5623_18070) - 3372850..3373332 (+) 483 WP_007499977.1 flagellar protein FlgN -
  P5623_RS18075 (P5623_18075) flgK 3373348..3374868 (+) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  P5623_RS18080 (P5623_18080) flgL 3374877..3375788 (+) 912 WP_017368141.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16648.03 Da        Isoelectric Point: 9.8662

>NTDB_id=807227 P5623_RS18045 WP_277687539.1 3370534..3370971(+) (comFA) [Bacillus altitudinis strain DSM 103869]
MNWLHEHITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQV
GVLGAESPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEEEFSEK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=807227 P5623_RS18045 WP_277687539.1 3370534..3370971(+) (comFA) [Bacillus altitudinis strain DSM 103869]
ATGAACTGGCTGCATGAACATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGT
AACTCATATTCTTCAAGGTCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGC
ATTTCAGAGATCATAGGTACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACGATTCAAGATGTTCAAGTG
GGCGTATTAGGTGCGGAATCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGA
TTTTTTTAACGGAGACGTGTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAA
TGAATAATACAGCTGAAGAAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(8-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

55.147

93.793

0.517
  comFA/cflA Streptococcus pneumoniae TIGR4

41.844

97.241

0.407
  comFA/cflA Streptococcus pneumoniae Rx1

41.844

97.241

0.407
  comFA/cflA Streptococcus pneumoniae D39

41.844

97.241

0.407
  comFA/cflA Streptococcus pneumoniae R6

41.844

97.241

0.407
  comFA/cflA Streptococcus mitis NCTC 12261

41.135

97.241

0.4
  comFA/cflA Streptococcus mitis SK321

40.426

97.241

0.393
  comFA Latilactobacillus sakei subsp. sakei 23K

41.406

88.276

0.366