Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   P5623_RS18025 Genome accession   NZ_CP120625
Coordinates   3366487..3367662 (+) Length   391 a.a.
NCBI ID   WP_024719243.1    Uniprot ID   A0A081LEM4
Organism   Bacillus altitudinis strain DSM 103869     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361487..3372662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS18005 (P5623_18005) - 3362079..3363275 (+) 1197 WP_041508115.1 glycosyltransferase -
  P5623_RS18010 (P5623_18010) - 3363410..3364477 (+) 1068 WP_024719245.1 MraY family glycosyltransferase -
  P5623_RS18015 (P5623_18015) - 3364515..3365612 (-) 1098 Protein_3400 LCP family protein -
  P5623_RS18020 (P5623_18020) - 3365597..3366265 (-) 669 WP_017357860.1 YigZ family protein -
  P5623_RS18025 (P5623_18025) degS 3366487..3367662 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  P5623_RS18030 (P5623_18030) degU 3367727..3368416 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  P5623_RS18035 (P5623_18035) - 3368629..3369471 (+) 843 WP_024719242.1 DegV family protein -
  P5623_RS18040 (P5623_18040) comFA 3369843..3370550 (+) 708 WP_277687538.1 DEAD/DEAH box helicase family protein Machinery gene
  P5623_RS18045 (P5623_18045) comFA 3370534..3370971 (+) 438 WP_277687539.1 helicase-related protein Machinery gene
  P5623_RS18050 (P5623_18050) - 3371036..3371329 (+) 294 WP_008348267.1 competence protein ComFB -
  P5623_RS18055 (P5623_18055) comFC 3371326..3372012 (+) 687 WP_173408337.1 ComF family protein Machinery gene
  P5623_RS18060 (P5623_18060) - 3372069..3372488 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45550.27 Da        Isoelectric Point: 5.8757

>NTDB_id=807224 P5623_RS18025 WP_024719243.1 3366487..3367662(+) (degS) [Bacillus altitudinis strain DSM 103869]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTENERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=807224 P5623_RS18025 WP_024719243.1 3366487..3367662(+) (degS) [Bacillus altitudinis strain DSM 103869]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTCAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGATGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATCACGGTCGTTCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGAATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAATGCCTAGGGGATACAGAAAATGAAAGAATTGCTTCTCAGTTCGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTCACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTGCTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LEM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841