Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P5623_RS18030 Genome accession   NZ_CP120625
Coordinates   3367727..3368416 (+) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain DSM 103869     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3362727..3373416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS18010 (P5623_18010) - 3363410..3364477 (+) 1068 WP_024719245.1 MraY family glycosyltransferase -
  P5623_RS18015 (P5623_18015) - 3364515..3365612 (-) 1098 Protein_3400 LCP family protein -
  P5623_RS18020 (P5623_18020) - 3365597..3366265 (-) 669 WP_017357860.1 YigZ family protein -
  P5623_RS18025 (P5623_18025) degS 3366487..3367662 (+) 1176 WP_024719243.1 sensor histidine kinase Regulator
  P5623_RS18030 (P5623_18030) degU 3367727..3368416 (+) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  P5623_RS18035 (P5623_18035) - 3368629..3369471 (+) 843 WP_024719242.1 DegV family protein -
  P5623_RS18040 (P5623_18040) comFA 3369843..3370550 (+) 708 WP_277687538.1 DEAD/DEAH box helicase family protein Machinery gene
  P5623_RS18045 (P5623_18045) comFA 3370534..3370971 (+) 438 WP_277687539.1 helicase-related protein Machinery gene
  P5623_RS18050 (P5623_18050) - 3371036..3371329 (+) 294 WP_008348267.1 competence protein ComFB -
  P5623_RS18055 (P5623_18055) comFC 3371326..3372012 (+) 687 WP_173408337.1 ComF family protein Machinery gene
  P5623_RS18060 (P5623_18060) - 3372069..3372488 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  P5623_RS18065 (P5623_18065) flgM 3372568..3372831 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  P5623_RS18070 (P5623_18070) - 3372850..3373332 (+) 483 WP_007499977.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=807225 P5623_RS18030 WP_008348273.1 3367727..3368416(+) (degU) [Bacillus altitudinis strain DSM 103869]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=807225 P5623_RS18030 WP_008348273.1 3367727..3368416(+) (degU) [Bacillus altitudinis strain DSM 103869]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996