Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P5623_RS06435 Genome accession   NZ_CP120625
Coordinates   1108320..1109570 (-) Length   416 a.a.
NCBI ID   WP_277687756.1    Uniprot ID   -
Organism   Bacillus altitudinis strain DSM 103869     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1103320..1114570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS06415 (P5623_06415) spoVS 1103889..1104149 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  P5623_RS06420 (P5623_06420) - 1104352..1105146 (-) 795 WP_277687755.1 TIGR00282 family metallophosphoesterase -
  P5623_RS06425 (P5623_06425) rny 1105236..1106798 (-) 1563 WP_003211958.1 ribonuclease Y -
  P5623_RS06430 (P5623_06430) recA 1107099..1108142 (-) 1044 WP_007499478.1 recombinase RecA Machinery gene
  P5623_RS06435 (P5623_06435) cinA 1108320..1109570 (-) 1251 WP_277687756.1 competence/damage-inducible protein A Machinery gene
  P5623_RS06440 (P5623_06440) pgsA 1109587..1110168 (-) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P5623_RS06445 (P5623_06445) - 1110242..1111153 (-) 912 WP_039166616.1 helix-turn-helix domain-containing protein -
  P5623_RS06450 (P5623_06450) - 1111177..1111968 (-) 792 WP_039166619.1 DUF3388 domain-containing protein -
  P5623_RS06455 (P5623_06455) - 1112100..1112357 (-) 258 WP_003211590.1 DUF3243 domain-containing protein -
  P5623_RS06460 (P5623_06460) - 1112430..1113158 (-) 729 WP_100325016.1 SDR family oxidoreductase -
  P5623_RS06465 (P5623_06465) - 1113188..1114444 (-) 1257 WP_277687757.1 MMPL family transporter -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45642.78 Da        Isoelectric Point: 4.8653

>NTDB_id=807190 P5623_RS06435 WP_277687756.1 1108320..1109570(-) (cinA) [Bacillus altitudinis strain DSM 103869]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPIGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=807190 P5623_RS06435 WP_277687756.1 1108320..1109570(-) (cinA) [Bacillus altitudinis strain DSM 103869]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGCGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAACAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGATTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mitis SK321

47.847

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.368

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394