Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P5657_RS15370 Genome accession   NZ_CP120621
Coordinates   2903772..2905022 (-) Length   416 a.a.
NCBI ID   WP_277709985.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2898772..2910022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS15355 (P5657_15355) rny 2899371..2900933 (-) 1563 WP_003221010.1 ribonuclease Y -
  P5657_RS15360 (P5657_15360) pbpX 2901209..2902384 (-) 1176 WP_134991497.1 serine hydrolase domain-containing protein -
  P5657_RS15365 (P5657_15365) recA 2902553..2903599 (-) 1047 WP_003245789.1 recombinase RecA Machinery gene
  P5657_RS15370 (P5657_15370) cinA 2903772..2905022 (-) 1251 WP_277709985.1 competence/damage-inducible protein A Machinery gene
  P5657_RS15375 (P5657_15375) pgsA 2905040..2905621 (-) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P5657_RS15380 (P5657_15380) rodZ 2905671..2906537 (-) 867 WP_206697876.1 RodZ family helix-turn-helix domain-containing protein -
  P5657_RS15385 (P5657_15385) - 2906604..2907395 (-) 792 WP_003220998.1 YmfK family protein -
  P5657_RS15390 (P5657_15390) ymfJ 2907525..2907782 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  P5657_RS15395 (P5657_15395) efpI 2907863..2908591 (-) 729 WP_038828260.1 EF-P-5 aminopentanone reductase -
  P5657_RS15400 (P5657_15400) ymfH 2908646..2909932 (-) 1287 WP_003244823.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45537.85 Da        Isoelectric Point: 5.3737

>NTDB_id=807068 P5657_RS15370 WP_277709985.1 2903772..2905022(-) (cinA) [Bacillus subtilis strain DSM 13019]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDLGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=807068 P5657_RS15370 WP_277709985.1 2903772..2905022(-) (cinA) [Bacillus subtilis strain DSM 13019]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATCTCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377