Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P5632_RS08805 Genome accession   NZ_CP120618
Coordinates   1581403..1582644 (+) Length   413 a.a.
NCBI ID   WP_013058805.1    Uniprot ID   D5DQ31
Organism   Priestia megaterium strain DSM 1804     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1576403..1587644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5632_RS08780 (P5632_08780) - 1577626..1578351 (+) 726 WP_013058810.1 SDR family oxidoreductase -
  P5632_RS08785 (P5632_08785) - 1578417..1578677 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  P5632_RS08790 (P5632_08790) - 1578891..1579682 (+) 792 WP_013058808.1 DUF3388 domain-containing protein -
  P5632_RS08795 (P5632_08795) - 1579695..1580657 (+) 963 WP_013058807.1 RodZ domain-containing protein -
  P5632_RS08800 (P5632_08800) pgsA 1580802..1581386 (+) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P5632_RS08805 (P5632_08805) cinA 1581403..1582644 (+) 1242 WP_013058805.1 competence/damage-inducible protein A Machinery gene
  P5632_RS08810 (P5632_08810) recA 1582844..1583881 (+) 1038 WP_013058804.1 recombinase RecA Machinery gene
  P5632_RS08815 (P5632_08815) rny 1584162..1585721 (+) 1560 WP_013058803.1 ribonuclease Y -
  P5632_RS08820 (P5632_08820) - 1585803..1586600 (+) 798 WP_013058802.1 TIGR00282 family metallophosphoesterase -
  P5632_RS08825 (P5632_08825) spoVS 1586824..1587084 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44859.97 Da        Isoelectric Point: 4.9071

>NTDB_id=806984 P5632_RS08805 WP_013058805.1 1581403..1582644(+) (cinA) [Priestia megaterium strain DSM 1804]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHANAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGICSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=806984 P5632_RS08805 WP_013058805.1 1581403..1582644(+) (cinA) [Priestia megaterium strain DSM 1804]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGTGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTAATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGGCCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTTGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5DQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.274

0.586
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.475
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.467
  cinA Streptococcus mitis SK321

45.952

100

0.467
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.462
  cinA Streptococcus pneumoniae R6

45.476

100

0.462
  cinA Streptococcus pneumoniae D39

45.238

100

0.46
  cinA Streptococcus mutans UA159

46.825

91.525

0.429
  cinA Streptococcus suis isolate S10

39.418

91.525

0.361