Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PVE91_RS14690 Genome accession   NZ_CP120400
Coordinates   3211952..3213211 (+) Length   419 a.a.
NCBI ID   WP_053517034.1    Uniprot ID   A0AAP7GSY1
Organism   Stenotrophomonas maltophilia strain LH-B2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3206952..3218211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVE91_RS14680 - 3207944..3210991 (-) 3048 WP_277381036.1 fused MFS/spermidine synthase -
  PVE91_RS14685 - 3211150..3211590 (-) 441 WP_277381037.1 pilin -
  PVE91_RS14690 pilC 3211952..3213211 (+) 1260 WP_053517034.1 type II secretion system F family protein Machinery gene
  PVE91_RS14695 - 3213218..3214081 (+) 864 WP_053517036.1 A24 family peptidase -
  PVE91_RS14700 coaE 3214092..3214703 (+) 612 WP_277381038.1 dephospho-CoA kinase -
  PVE91_RS14705 - 3214758..3215141 (-) 384 WP_193396507.1 hypothetical protein -
  PVE91_RS14710 - 3215401..3216729 (-) 1329 WP_277381039.1 HAMP domain-containing sensor histidine kinase -
  PVE91_RS14715 - 3216734..3217411 (-) 678 WP_053517044.1 response regulator transcription factor -
  PVE91_RS14720 - 3217420..3217893 (-) 474 WP_065175768.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45897.29 Da        Isoelectric Point: 10.1525

>NTDB_id=805505 PVE91_RS14690 WP_053517034.1 3211952..3213211(+) (pilC) [Stenotrophomonas maltophilia strain LH-B2]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRRQGISPGQVKPKPKPLFGAAGKPVSPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDTIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENLEALKGKIKKALFYPAMVLVVAFLVSTILLVWVVPQFEEVFQSFGADLPAFTQMVVNLSRFMVSWWWL
IAIVAIGAVVAIAMTYRRSEKMQHTVDRLILKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNKVYGE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=805505 PVE91_RS14690 WP_053517034.1 3211952..3213211(+) (pilC) [Stenotrophomonas maltophilia strain LH-B2]
ATGTCTGTGAGTCGCAGTGCGATCAAGAAGGAGCCCGTGGCCCGCGCCACGATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCATAAAGATGAAGGGCGAGCAGCTGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCAGGC
AGGGCATCAGCCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGTGCGGCCGGCAAGCCGGTCTCGCCGAAGGAC
ATCGCGTTCTTCAGCCGGCAGATGGCCACGATGATGAAGTCCGGCGTGCCGATCGTGTCGGCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACACGATCCGCACCGACATCGAGGGCGGCTCATCGCTGCACGAGG
CCATCAGCAAGCATCCGGTGCAGTTCGACGAGCTTTACCGCAACCTGGTACGGGCCGGCGAAAGCGCCGGTGTGCTGGAG
ACCGTGCTGGACACGATCGCCTCCTACAAGGAAAACCTCGAGGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCATGGTGCTGGTGGTGGCGTTCCTGGTCAGCACGATCCTGCTGGTCTGGGTGGTCCCGCAGTTCGAGGAAGTCTTCC
AGAGCTTCGGCGCCGACCTGCCGGCATTCACCCAGATGGTGGTGAACCTGTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATCGCCATCGTCGCCATCGGCGCGGTGGTGGCGATCGCCATGACCTACCGGCGATCGGAGAAGATGCAGCACACCGTCGA
CCGGCTGATCCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCGATCGCCCGCTTCTCCCGCACCACAGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTCGCCGGCGCCACCGGCAACAAGGTCTACGGCGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGCTATCCGGTCAACATGGCGATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTGATTCAGATGACCGGCATCGGCGAGGAGGCCGGCGCCCTTGACACCATGCTGTTCAAGGTCGCCGAATACTACG
AGCAGGAGGTCAACAACGCCGTGGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGCGGCCTGGTCATTGCGATGTACCTGCCGATCTTCAAACTGGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

50.614

97.136

0.492
  pilG Neisseria gonorrhoeae MS11

43.073

94.749

0.408
  pilG Neisseria meningitidis 44/76-A

42.821

94.749

0.406
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

37.811

95.943

0.363