Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   P3T88_RS12430 Genome accession   NZ_CP120200
Coordinates   2615318..2615824 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain Dog003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2610318..2620824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T88_RS12410 (P3T88_12410) - 2611560..2613551 (+) 1992 WP_014614918.1 catalase -
  P3T88_RS12415 (P3T88_12415) - 2613765..2614622 (-) 858 WP_250882408.1 Abi family protein -
  P3T88_RS12420 (P3T88_12420) - 2614589..2614831 (-) 243 WP_020220245.1 hypothetical protein -
  P3T88_RS12425 (P3T88_12425) rpsR 2615022..2615264 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  P3T88_RS12430 (P3T88_12430) ssbA 2615318..2615824 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  P3T88_RS12435 (P3T88_12435) rpsF 2615847..2616143 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  P3T88_RS12440 (P3T88_12440) sbi 2616480..2617970 (+) 1491 WP_063284542.1 Ig-binding surface protein Sbi/SpsK -
  P3T88_RS12445 (P3T88_12445) - 2618024..2618833 (-) 810 WP_214544568.1 ABC transporter permease subunit -
  P3T88_RS12450 (P3T88_12450) - 2618826..2619761 (-) 936 WP_323696305.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=804633 P3T88_RS12430 WP_014614920.1 2615318..2615824(-) (ssbA) [Staphylococcus pseudintermedius strain Dog003]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=804633 P3T88_RS12430 WP_014614920.1 2615318..2615824(-) (ssbA) [Staphylococcus pseudintermedius strain Dog003]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGGAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAATGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381