Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   RJD14_RS07370 Genome accession   NZ_CP134493
Coordinates   1644231..1644938 (-) Length   235 a.a.
NCBI ID   WP_311125685.1    Uniprot ID   -
Organism   Streptomyces sp. CGMCC 4.1456     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639231..1649938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD14_RS07360 (RJD14_07360) - 1641736..1642701 (+) 966 WP_311125684.1 hypothetical protein -
  RJD14_RS07365 (RJD14_07365) clpX 1642765..1644051 (-) 1287 WP_184592647.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  RJD14_RS07370 (RJD14_07370) clpP 1644231..1644938 (-) 708 WP_311125685.1 ATP-dependent Clp protease proteolytic subunit Regulator
  RJD14_RS07375 (RJD14_07375) - 1645048..1645653 (-) 606 WP_311130292.1 ATP-dependent Clp protease proteolytic subunit -
  RJD14_RS07380 (RJD14_07380) tig 1646036..1647421 (-) 1386 WP_311125686.1 trigger factor -
  RJD14_RS07395 (RJD14_07395) - 1648003..1649160 (-) 1158 WP_311125687.1 tyrosine-type recombinase/integrase -
  RJD14_RS07400 (RJD14_07400) - 1649160..1649372 (-) 213 WP_261681699.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26066.53 Da        Isoelectric Point: 4.5730

>NTDB_id=804168 RJD14_RS07370 WP_311125685.1 1644231..1644938(-) (clpP) [Streptomyces sp. CGMCC 4.1456]
MNQFPGSGIYDRMDAVQDMSGSQGRYTGPQAESRYIIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQ
LLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYS
ETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTTPVEKIREDIERDKILTAEDALSYGLIDQVISTRKMDNSSLR

Nucleotide


Download         Length: 708 bp        

>NTDB_id=804168 RJD14_RS07370 WP_311125685.1 1644231..1644938(-) (clpP) [Streptomyces sp. CGMCC 4.1456]
GTGAACCAGTTCCCCGGCAGCGGGATCTACGACCGTATGGACGCCGTGCAGGACATGAGCGGCTCGCAGGGCCGCTACAC
CGGCCCGCAGGCCGAGTCCCGCTACATCATTCCGCGCTTCGTCGAGCGCACTTCCCAGGGCATCCGCGAGTACGACCCGT
ACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAG
CTGCTGTGCCTGGAGTCGATGGACCCCGACCGTGACATCTCGGTGTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCT
CACCGCGATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCG
CCGTCCTGCTGGCCGCCGGCACGCCGGGCAAGCGCATGGCCCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGC
GAGACCGGCCGCGGTCAGGTGTCCGACCTGGAGATCGCCGCGAACGAGATCCTCCGGATGCGCTCGCAGCTCGAGGAGAT
GCTGGCCAAGCACTCCACCACGCCGGTCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACG
CGCTGAGCTACGGCTTGATCGACCAGGTCATCAGCACCCGGAAGATGGACAACTCGAGCCTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(46-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

80.851

0.413
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.794

80.426

0.409
  clpP Streptococcus mutans UA159

43.415

87.234

0.379
  clpP Streptococcus pyogenes JRS4

43.781

85.532

0.374
  clpP Streptococcus pyogenes MGAS315

43.781

85.532

0.374
  clpP Lactococcus lactis subsp. cremoris KW2

43.564

85.957

0.374
  clpP Streptococcus thermophilus LMG 18311

44.103

82.979

0.366
  clpP Streptococcus thermophilus LMD-9

44.103

82.979

0.366
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.574

85.957

0.366
  clpP Streptococcus pneumoniae Rx1

43.367

83.404

0.362
  clpP Streptococcus pneumoniae D39

43.367

83.404

0.362
  clpP Streptococcus pneumoniae R6

43.367

83.404

0.362
  clpP Streptococcus pneumoniae TIGR4

43.367

83.404

0.362