Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   P1X13_RS00645 Genome accession   NZ_CP119678
Coordinates   101936..102874 (+) Length   312 a.a.
NCBI ID   WP_002986557.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1004     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 96936..107874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1X13_RS00635 (P1X13_00635) rpoC 97685..101326 (+) 3642 WP_011528160.1 DNA-directed RNA polymerase subunit beta' -
  P1X13_RS00640 (P1X13_00640) - 101478..101843 (+) 366 WP_002986560.1 DUF1033 family protein -
  P1X13_RS00645 (P1X13_00645) comYA 101936..102874 (+) 939 WP_002986557.1 competence type IV pilus ATPase ComGA Machinery gene
  P1X13_RS00650 (P1X13_00650) comYB 102810..103844 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  P1X13_RS00655 (P1X13_00655) comYC 103846..104172 (+) 327 WP_032465607.1 competence type IV pilus major pilin ComGC Machinery gene
  P1X13_RS00660 (P1X13_00660) comGD 104147..104575 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  P1X13_RS00665 (P1X13_00665) comGE 104532..104816 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  P1X13_RS00670 (P1X13_00670) comYF 104809..105243 (+) 435 WP_023612536.1 competence type IV pilus minor pilin ComGF Machinery gene
  P1X13_RS00675 (P1X13_00675) comGG 105227..105553 (+) 327 WP_136274078.1 competence type IV pilus minor pilin ComGG -
  P1X13_RS00680 (P1X13_00680) comYH 105651..106604 (+) 954 WP_136274080.1 class I SAM-dependent methyltransferase Machinery gene
  P1X13_RS00685 (P1X13_00685) - 106663..107859 (+) 1197 WP_023612537.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35087.35 Da        Isoelectric Point: 8.5799

>NTDB_id=800262 P1X13_RS00645 WP_002986557.1 101936..102874(+) (comYA) [Streptococcus pyogenes strain 1004]
MVQVLAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISNYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=800262 P1X13_RS00645 WP_002986557.1 101936..102874(+) (comYA) [Streptococcus pyogenes strain 1004]
ATGGTACAAGTATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAATTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAAATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.736

99.679

0.615
  comYA Streptococcus mutans UA140

61.736

99.679

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.679

0.606
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.645

99.359

0.603
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.842

99.679

0.587
  comGA Lactococcus lactis subsp. cremoris KW2

50.482

99.679

0.503
  comGA Latilactobacillus sakei subsp. sakei 23K

39.655

92.949

0.369