Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   P0M07_RS04005 Genome accession   NZ_CP119431
Coordinates   827900..828217 (+) Length   105 a.a.
NCBI ID   WP_325770908.1    Uniprot ID   -
Organism   Aeromonas caviae strain K523     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 825582..826919 827900..828217 flank 981


Gene organization within MGE regions


Location: 825582..828217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M07_RS03995 (P0M07_04010) - 825582..826919 (+) 1338 WP_041205253.1 IS4-like element ISAeme15 family transposase -
  P0M07_RS04000 (P0M07_04015) cysQ 826965..827735 (-) 771 WP_103858541.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  P0M07_RS04005 (P0M07_04020) comEA 827900..828217 (+) 318 WP_325770908.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 10960.82 Da        Isoelectric Point: 10.3206

>NTDB_id=799280 P0M07_RS04005 WP_325770908.1 827900..828217(+) (comEA) [Aeromonas caviae strain K523]
MNKKTLIAALLLGSLPLLSQPLLAADKAATKPVATTQVKESGKINLNTASAGELTALKGIGEKKAQAIIDHREKQGKFTS
VDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=799280 P0M07_RS04005 WP_325770908.1 827900..828217(+) (comEA) [Aeromonas caviae strain K523]
ATGAACAAGAAGACCCTGATCGCCGCACTGCTGTTGGGCAGCCTCCCCCTGTTGAGCCAACCTCTGCTGGCCGCCGACAA
GGCGGCGACCAAGCCTGTGGCCACCACCCAAGTCAAGGAGAGCGGCAAGATCAATCTCAATACCGCCAGTGCCGGCGAGC
TCACCGCCCTGAAGGGCATTGGCGAGAAGAAGGCACAGGCCATCATCGACCACAGGGAGAAGCAGGGCAAGTTCACCTCC
GTCGATCAACTGGCGGACGTCAGTGGCATCGGACCTGCCACGCTGGAAGCAAACCGGGACATGATTATCGTCAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

49.524

100

0.495
  comEA Vibrio cholerae strain A1552

49.524

100

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

46.729

100

0.476
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.467
  comEA Legionella pneumophila strain ERS1305867

44

95.238

0.419
  comEA Legionella pneumophila str. Paris

44

95.238

0.419
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.852

77.143

0.4
  comEA/celA/cilE Streptococcus mitis SK321

54.795

69.524

0.381
  comEA Acinetobacter baylyi ADP1

46.914

77.143

0.362