Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PTW35_RS17475 Genome accession   NZ_CP119423
Coordinates   3825763..3826857 (-) Length   364 a.a.
NCBI ID   WP_281026003.1    Uniprot ID   -
Organism   Photobacterium sp. DA100     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3820763..3831857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTW35_RS17445 (PTW35_17445) hemF 3821330..3822235 (-) 906 WP_281025998.1 oxygen-dependent coproporphyrinogen oxidase -
  PTW35_RS17450 (PTW35_17450) tsaC 3822246..3822803 (-) 558 WP_281025999.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  PTW35_RS17455 (PTW35_17455) purE 3823003..3823491 (+) 489 WP_281026000.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PTW35_RS17460 (PTW35_17460) - 3823491..3824606 (+) 1116 WP_281027552.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PTW35_RS17465 (PTW35_17465) - 3824677..3825246 (-) 570 WP_281026001.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PTW35_RS17470 (PTW35_17470) - 3825287..3825760 (-) 474 WP_281026002.1 DUF494 family protein -
  PTW35_RS17475 (PTW35_17475) dprA 3825763..3826857 (-) 1095 WP_281026003.1 DNA-processing protein DprA Machinery gene
  PTW35_RS17480 (PTW35_17480) - 3826867..3827973 (-) 1107 WP_281026004.1 LysM peptidoglycan-binding domain-containing protein -
  PTW35_RS17485 (PTW35_17485) def 3828245..3828766 (+) 522 WP_281026005.1 peptide deformylase -
  PTW35_RS17490 (PTW35_17490) fmt 3828794..3829738 (+) 945 WP_281026006.1 methionyl-tRNA formyltransferase -
  PTW35_RS17495 (PTW35_17495) rsmB 3829836..3831116 (+) 1281 WP_281026007.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39332.26 Da        Isoelectric Point: 7.0986

>NTDB_id=799202 PTW35_RS17475 WP_281026003.1 3825763..3826857(-) (dprA) [Photobacterium sp. DA100]
MSSLYDWLVVASTPQLGGYRIGRLLERTTPTGLLQMSDHERGGLGLSERQCQHLKHPPLQRIERCLEWHHRPNQQIIPLG
SPLYPSMLKAIPSPPPVLFVRGEPRWLHEPQLAIVGSRAASIDGLEAAYEFAAAMVAAEYVVTSGLALGIDSRAHYGALK
NGGATVAVLGSGLDKVYPAKHRELAATIVEQGALVSEFWPDEAPRPQHFPRRNRVISGLSVGVLVVEAEIKSGSLITARY
ALEQGRDVFAIPGSIYSAMSRGCHALIKNGAKLVETPVDIFEDVGVLTECAKSSRSVLSAPQPENEKLPFPALLANVGNE
ATPVDVVAERSGLPVHEVMMQLLELELHGVVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=799202 PTW35_RS17475 WP_281026003.1 3825763..3826857(-) (dprA) [Photobacterium sp. DA100]
ATGTCCTCCCTCTACGATTGGCTAGTCGTGGCATCCACTCCCCAGCTAGGTGGTTATCGCATCGGACGATTGCTGGAGCG
CACCACCCCGACCGGCCTGTTGCAGATGTCCGATCACGAGCGGGGAGGACTTGGCCTTAGCGAGCGCCAATGCCAGCATC
TGAAACATCCGCCGCTGCAGCGAATTGAGCGGTGCCTCGAGTGGCATCACCGCCCCAACCAGCAGATCATCCCCCTTGGT
TCCCCGCTCTACCCCTCAATGCTCAAAGCGATCCCCTCTCCTCCCCCGGTATTGTTTGTGCGCGGCGAGCCTCGTTGGTT
GCATGAGCCTCAGCTGGCGATAGTAGGCAGCCGAGCGGCCAGTATTGATGGTCTGGAGGCTGCCTATGAATTTGCTGCCG
CGATGGTCGCGGCGGAATACGTGGTAACAAGTGGCCTTGCTCTGGGGATTGATAGCCGGGCCCATTACGGAGCATTGAAA
AATGGCGGTGCCACGGTTGCGGTATTGGGCTCTGGCCTTGATAAGGTCTATCCGGCAAAGCACCGCGAGTTAGCCGCGAC
GATTGTCGAGCAGGGGGCGCTGGTGTCGGAGTTCTGGCCCGATGAAGCACCGCGTCCGCAGCATTTTCCCCGCCGTAATC
GAGTGATCAGTGGGCTGTCGGTCGGCGTACTAGTGGTTGAGGCTGAAATCAAAAGTGGATCTCTTATCACGGCCCGCTAT
GCACTGGAACAAGGTCGGGACGTCTTTGCCATTCCCGGATCGATCTACAGTGCAATGAGCCGAGGATGCCATGCGTTGAT
AAAAAACGGTGCTAAATTAGTCGAAACGCCGGTCGATATCTTTGAGGACGTGGGGGTACTGACGGAGTGCGCAAAAAGTA
GCCGATCGGTTCTTTCCGCCCCACAACCTGAAAATGAAAAATTGCCATTTCCAGCGCTGTTGGCTAACGTAGGCAATGAG
GCAACACCCGTAGATGTAGTTGCTGAACGCAGTGGGCTACCCGTTCATGAAGTCATGATGCAGTTACTTGAGTTGGAATT
GCATGGCGTGGTCGCTGCCGTACCAGGTGGCTATGTCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)

DprA winged helix domain (DprA_WH)

(310-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.989

100

0.536
  dprA Vibrio cholerae strain A1552

51.087

100

0.516
  dprA Glaesserella parasuis strain SC1401

45.6

100

0.47
  dprA Legionella pneumophila strain ERS1305867

42.265

99.451

0.42
  dprA Haemophilus influenzae Rd KW20

43.75

92.308

0.404
  dprA Neisseria gonorrhoeae strain FA1090

42.188

87.912

0.371
  dprA Neisseria meningitidis strain C311

41.745

88.187

0.368
  dprA Neisseria meningitidis MC58

41.745

88.187

0.368
  dprA Neisseria gonorrhoeae MS11

41.875

87.912

0.368