Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PTW35_RS01975 Genome accession   NZ_CP119423
Coordinates   393329..394549 (-) Length   406 a.a.
NCBI ID   WP_281026343.1    Uniprot ID   -
Organism   Photobacterium sp. DA100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388329..399549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTW35_RS01950 (PTW35_01950) mutT 390103..390501 (+) 399 WP_281026338.1 8-oxo-dGTP diphosphatase MutT -
  PTW35_RS01955 (PTW35_01955) yacG 390580..390798 (-) 219 WP_281026339.1 DNA gyrase inhibitor YacG -
  PTW35_RS01960 (PTW35_01960) zapD 390807..391544 (-) 738 WP_281026340.1 cell division protein ZapD -
  PTW35_RS01965 (PTW35_01965) coaE 391564..392184 (-) 621 WP_281026341.1 dephospho-CoA kinase -
  PTW35_RS01970 (PTW35_01970) pilD 392188..393057 (-) 870 WP_281026342.1 A24 family peptidase Machinery gene
  PTW35_RS01975 (PTW35_01975) pilC 393329..394549 (-) 1221 WP_281026343.1 type II secretion system F family protein Machinery gene
  PTW35_RS01980 (PTW35_01980) pilB 394595..396295 (-) 1701 WP_281026344.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PTW35_RS01985 (PTW35_01985) - 396295..396744 (-) 450 WP_281026345.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PTW35_RS01990 (PTW35_01990) nadC 397064..397951 (-) 888 WP_281027419.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PTW35_RS01995 (PTW35_01995) ampD 398489..399043 (+) 555 WP_039456936.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44776.79 Da        Isoelectric Point: 10.3900

>NTDB_id=799181 PTW35_RS01975 WP_281026343.1 393329..394549(-) (pilC) [Photobacterium sp. DA100]
MAKDRKIRYYRWRGINPTGKRLSGVMLGFQEQEIRAKLGEQQIQVRKIKRHQPSTLSKRRNQLMATDVSAITRQLATMVN
AGVPVVQALKLIAQSHHKAEARATLTMVSNQVEAGSSLAKALHTSSPLFDDFYCDLVATGEQTGHLAEAFNRLATYREKN
EAMRKKVIKAMIYPSMVTLTAIIVTVLMLIFVIPQFANIFNSFGAELPWFTQWVIDVSNLMISHGPYLALGLLVAIIFSI
TAYRKSDKHKLRVHRLLLAIPIMGPIMRKAAIARFARTLATTFSSGIPLLSGLEAAGRTAGNRFIEQAIEGAHGNTAAGM
PLHLALRHSGVFPELMLQMVMIGEESGSIDDMLNKIALTYEDDVDNSVDNLGKILEPLIILLLGGLIGGLLIAMYMPVFK
LMSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=799181 PTW35_RS01975 WP_281026343.1 393329..394549(-) (pilC) [Photobacterium sp. DA100]
ATGGCCAAGGACAGAAAAATACGTTATTACCGCTGGCGTGGGATCAACCCAACCGGCAAGCGCTTGTCAGGTGTCATGCT
CGGCTTTCAGGAGCAGGAGATCCGCGCCAAGCTCGGCGAGCAGCAGATCCAGGTACGCAAGATCAAGCGCCACCAGCCCT
CGACCCTGAGCAAGCGTAGGAACCAGCTCATGGCCACAGATGTCTCCGCGATCACCCGCCAGCTCGCCACCATGGTGAAC
GCCGGCGTGCCCGTGGTGCAGGCCCTCAAACTCATCGCACAGAGCCACCACAAAGCCGAGGCCAGGGCCACACTGACCAT
GGTCAGCAACCAGGTCGAAGCCGGCTCAAGCCTTGCCAAAGCCTTGCATACCAGCTCGCCGCTGTTTGATGATTTCTACT
GCGATCTGGTCGCCACCGGCGAGCAAACCGGCCACTTGGCCGAAGCCTTCAACCGCCTTGCCACCTACCGCGAAAAAAAC
GAAGCCATGCGCAAGAAGGTGATCAAGGCGATGATCTACCCGTCGATGGTGACCCTGACGGCGATTATCGTCACCGTGCT
GATGCTGATTTTCGTGATCCCGCAATTTGCCAATATCTTCAATAGCTTTGGCGCTGAACTGCCATGGTTTACCCAATGGG
TCATCGATGTATCAAACCTCATGATCAGCCATGGCCCCTACCTCGCGCTGGGCTTGCTGGTGGCGATCATCTTTTCCATT
ACCGCTTACCGTAAATCAGACAAACACAAGCTGCGGGTTCACCGCTTGCTGCTGGCGATCCCCATTATGGGCCCCATCAT
GCGCAAAGCCGCCATTGCCCGTTTTGCCCGAACCCTTGCCACCACTTTCTCGTCGGGGATCCCACTGCTGAGCGGTTTGG
AAGCGGCCGGAAGAACGGCGGGCAACCGCTTTATCGAGCAAGCAATCGAAGGTGCCCACGGCAATACCGCGGCCGGCATG
CCACTGCATCTGGCGCTGCGCCACAGCGGGGTCTTTCCCGAGCTGATGCTGCAGATGGTGATGATCGGCGAAGAATCCGG
CTCCATTGACGATATGCTCAACAAAATTGCCCTCACCTACGAGGACGATGTCGACAATAGCGTCGATAATCTGGGGAAAA
TCCTCGAACCCCTGATTATCCTGCTCCTCGGCGGCCTGATCGGCGGGTTGCTGATCGCCATGTACATGCCGGTGTTCAAG
CTGATGAGTGTGGTGGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

52.369

98.768

0.517
  pilC Vibrio campbellii strain DS40M4

51.621

98.768

0.51
  pilG Neisseria meningitidis 44/76-A

42.308

96.059

0.406
  pilG Neisseria gonorrhoeae MS11

41.371

97.044

0.401
  pilC Pseudomonas stutzeri DSM 10701

40.05

97.783

0.392
  pilC Acinetobacter baylyi ADP1

39.043

97.783

0.382
  pilC Acinetobacter baumannii D1279779

38.539

97.783

0.377