Detailed information NTG0799180

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PTW35_RS01970
• Genome accession: NZ_CP119423
• Coordinates: 392188..393057 (-)
• Length: 289 a.a.
• NCBI ID: WP_281026342.1
• Uniprot ID: -
• Organism: Photobacterium sp. DA100
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 387188..398057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTW35_RS01945 (PTW35_01945)	secA	387242..389968 (+)	2727	WP_281026337.1	preprotein translocase subunit SecA	-
PTW35_RS01950 (PTW35_01950)	mutT	390103..390501 (+)	399	WP_281026338.1	8-oxo-dGTP diphosphatase MutT	-
PTW35_RS01955 (PTW35_01955)	yacG	390580..390798 (-)	219	WP_281026339.1	DNA gyrase inhibitor YacG	-
PTW35_RS01960 (PTW35_01960)	zapD	390807..391544 (-)	738	WP_281026340.1	cell division protein ZapD	-
PTW35_RS01965 (PTW35_01965)	coaE	391564..392184 (-)	621	WP_281026341.1	dephospho-CoA kinase	-
PTW35_RS01970 (PTW35_01970)	pilD	392188..393057 (-)	870	WP_281026342.1	A24 family peptidase	Machinery gene
PTW35_RS01975 (PTW35_01975)	pilC	393329..394549 (-)	1221	WP_281026343.1	type II secretion system F family protein	Machinery gene
PTW35_RS01980 (PTW35_01980)	pilB	394595..396295 (-)	1701	WP_281026344.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PTW35_RS01985 (PTW35_01985)	-	396295..396744 (-)	450	WP_281026345.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PTW35_RS01990 (PTW35_01990)	nadC	397064..397951 (-)	888	WP_281027419.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32223.41 Da
• Isoelectric Point: 7.0360

>NTDB_id=799180 PTW35_RS01970 WP_281026342.1 392188..393057(-) (pilD) [Photobacterium sp. DA100]
MTLLSVYPWLFPVFAAIFGLLVGSFLNVVIYRLPIMMERQWRADCTEYFPELGPLQDTGTFNLSIPRSRCPHCQHPISMW
DNIPVISWLLLKGQCRNCKASISARYPAIELLTAVISTTVALFLPASTWSLAVILFSFALIALTFIDIDKMLLPDQITLP
LMWAGLLLSLLGISPVSLQDAVIGAMAGYLSLWSLYWTFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPFVVLFSSLVGA
ICGIIMMRRQQTDGQQPFSFGPYLAVAGWVAILWGEPLLNWYLTVYLGL

Nucleotide

• Length: 870 bp

>NTDB_id=799180 PTW35_RS01970 WP_281026342.1 392188..393057(-) (pilD) [Photobacterium sp. DA100]
ATGACGCTGCTGTCTGTCTATCCTTGGTTATTTCCTGTTTTTGCTGCAATTTTCGGATTGCTGGTAGGTAGCTTCCTCAA
CGTGGTGATCTATCGCCTGCCAATCATGATGGAGCGCCAATGGAGAGCCGACTGCACCGAGTATTTCCCCGAGCTAGGCC
CACTGCAGGACACTGGCACCTTCAACCTCAGCATCCCACGATCGCGCTGCCCGCACTGCCAGCACCCAATTAGCATGTGG
GATAACATTCCGGTGATCAGCTGGCTGCTGCTCAAAGGTCAATGCCGCAACTGCAAGGCCAGCATCAGCGCGCGTTACCC
GGCGATCGAACTCCTAACCGCGGTGATCAGTACCACGGTTGCCCTCTTTCTGCCGGCTTCGACCTGGTCACTGGCGGTGA
TCCTGTTCAGCTTTGCCCTGATCGCCCTGACCTTTATCGACATCGACAAGATGTTGCTGCCGGATCAGATCACCCTGCCG
CTGATGTGGGCTGGCTTGCTGCTGTCGCTACTGGGGATCTCTCCGGTCAGCCTTCAGGATGCCGTCATCGGGGCCATGGC
CGGTTACCTCTCGCTGTGGAGCCTGTACTGGACCTTCAAACTGCTAACCGGCAAGGAAGGCATGGGCTACGGCGACTTCA
AGCTGCTGGCAGCTCTGGGGGCCTGGCTGGGCTGGCAGTTACTACCATTTGTCGTGCTGTTCTCCTCCCTGGTTGGGGCG
ATATGCGGCATTATCATGATGCGCCGCCAGCAAACAGACGGTCAGCAGCCCTTCTCTTTCGGCCCTTACCTGGCAGTGGC
CGGCTGGGTCGCGATCTTGTGGGGTGAGCCACTGCTCAACTGGTATCTAACCGTTTATCTGGGGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	64.583	99.654	0.644
pilD	Vibrio campbellii strain DS40M4	62.976	100	0.63
pilD	Neisseria gonorrhoeae MS11	49.653	99.654	0.495
pilD	Acinetobacter baumannii D1279779	50.554	93.772	0.474
pilD	Acinetobacter nosocomialis M2	50.185	93.772	0.471