Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P0G38_RS17020 Genome accession   NZ_CP119393
Coordinates   3626082..3627320 (-) Length   412 a.a.
NCBI ID   WP_275853441.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain ASE4     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3621082..3632320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0G38_RS17000 (P0G38_17000) pgmB 3621399..3622049 (+) 651 WP_121260440.1 beta-phosphoglucomutase -
  P0G38_RS17005 (P0G38_17005) treR 3622104..3622820 (+) 717 WP_005226457.1 trehalose operon repressor -
  P0G38_RS17010 (P0G38_17010) rny 3623119..3624693 (-) 1575 WP_005232891.1 ribonuclease Y -
  P0G38_RS17015 (P0G38_17015) recA 3624936..3625979 (-) 1044 WP_008376737.1 recombinase RecA Machinery gene
  P0G38_RS17020 (P0G38_17020) cinA 3626082..3627320 (-) 1239 WP_275853441.1 competence/damage-inducible protein A Machinery gene
  P0G38_RS17025 (P0G38_17025) pgsA 3627448..3628029 (-) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P0G38_RS17030 (P0G38_17030) - 3628162..3629064 (-) 903 WP_275853443.1 helix-turn-helix domain-containing protein -
  P0G38_RS17035 (P0G38_17035) yfmH 3629529..3630827 (-) 1299 WP_275853445.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  P0G38_RS17040 (P0G38_17040) yfmF 3630820..3632088 (-) 1269 WP_275853447.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44784.90 Da        Isoelectric Point: 4.6005

>NTDB_id=798833 P0G38_RS17020 WP_275853441.1 3626082..3627320(-) (cinA) [Enterococcus casseliflavus strain ASE4]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYEIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVGLLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAATKSKLLGIDP
GLLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=798833 P0G38_RS17020 WP_275853441.1 3626082..3627320(-) (cinA) [Enterococcus casseliflavus strain ASE4]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAGGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTGTCTCGCGTTTTGCGCTATTACGA
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCTACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGGGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGCAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GGGCTTTTGGAAAGCTATGGGACTGTTAGTCAGGAATGTGCAGAAGCAATGGCCGTCTATGCCCGCAAACAAGCCGAGAC
TGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAGTTAGAAGGTCAGCCTAAAGGCACCGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCCGTCATG
GCGGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.118

100

0.515
  cinA Streptococcus mitis SK321

49.882

100

0.512
  cinA Streptococcus pneumoniae D39

49.882

100

0.512
  cinA Streptococcus pneumoniae Rx1

49.882

100

0.512
  cinA Streptococcus pneumoniae R6

49.882

100

0.512
  cinA Streptococcus mitis NCTC 12261

49.409

100

0.507
  cinA Streptococcus mutans UA159

49.76

100

0.502
  cinA Bacillus subtilis subsp. subtilis str. 168

44.743

99.272

0.444
  cinA Streptococcus suis isolate S10

42.754

100

0.43