Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PY254_RS06565 Genome accession   NZ_CP119392
Coordinates   1544135..1545406 (-) Length   423 a.a.
NCBI ID   WP_281014675.1    Uniprot ID   -
Organism   Rhodanobacter sp. AS-Z3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1539135..1550406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY254_RS06540 (PY254_06540) - 1540069..1540863 (+) 795 WP_281014670.1 thymidylate synthase -
  PY254_RS06545 (PY254_06545) - 1541008..1541496 (+) 489 WP_281014671.1 dihydrofolate reductase -
  PY254_RS06550 (PY254_06550) - 1541526..1542461 (+) 936 WP_281014672.1 Nudix family hydrolase -
  PY254_RS06555 (PY254_06555) coaE 1542523..1543143 (-) 621 WP_281014673.1 dephospho-CoA kinase -
  PY254_RS06560 (PY254_06560) pilD 1543140..1543997 (-) 858 WP_281014674.1 A24 family peptidase Machinery gene
  PY254_RS06565 (PY254_06565) pilC 1544135..1545406 (-) 1272 WP_281014675.1 type II secretion system F family protein Machinery gene
  PY254_RS06570 (PY254_06570) pilB 1545549..1547273 (-) 1725 WP_281014676.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PY254_RS06575 (PY254_06575) - 1547703..1548557 (+) 855 WP_281014677.1 glycosyltransferase family 2 protein -
  PY254_RS06580 (PY254_06580) - 1548550..1549710 (+) 1161 WP_281014678.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46192.38 Da        Isoelectric Point: 9.7628

>NTDB_id=798791 PY254_RS06565 WP_281014675.1 1544135..1545406(-) (pilC) [Rhodanobacter sp. AS-Z3]
MATATATNIDKARALGAQRSEVSKLTTYEWVALDKRGKRMKGDMPAKNASLVKAELRRQGMNPQTVRERSKPLFGSTGST
VKPGDVAIFSRQIATMMASGVPMVQSFDIIADGQKNPRFKNILLDVKQNIEGGASLHEALGRYPVQFDELYCNLVHAGEA
SGVLDTVLDTVATYKERTEAIKKKIKKALFYPMMVLAVVFLVMLIMLLFVVPVFTKTFQDAGADLPAPTQVLVSMSEFMQ
SYWWLVIGIIIGSITAIIMAKKRSLKFAHFLDRLSLKMPVMGNIIRNSAIARFSRTLGVTFRAGVPLVEALDAVAGATGS
IVYGDAVRQMRDDISVGHQLQLAMKQTGLFPNMVVQMTAIGEESGALDNMLFKVAEFYEEEVENAVDTLSTLLEPIIMVV
LGGIVGGMVVALYLPIFKLAGTV

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=798791 PY254_RS06565 WP_281014675.1 1544135..1545406(-) (pilC) [Rhodanobacter sp. AS-Z3]
ATGGCCACGGCTACCGCAACGAATATCGACAAGGCACGGGCGCTCGGCGCTCAACGCAGCGAAGTCAGCAAGCTGACCAC
GTATGAGTGGGTGGCGCTGGACAAGCGCGGCAAGCGCATGAAAGGCGACATGCCGGCGAAGAATGCCTCACTGGTAAAGG
CGGAACTACGCCGCCAGGGCATGAACCCGCAAACGGTGCGCGAGCGTTCCAAACCGCTGTTCGGCAGCACCGGAAGCACG
GTGAAACCGGGTGACGTGGCCATTTTCAGCCGCCAGATCGCCACCATGATGGCCTCCGGCGTACCCATGGTGCAGTCCTT
CGACATCATTGCGGACGGCCAGAAGAACCCCCGTTTCAAGAATATCCTGCTGGATGTAAAGCAGAACATCGAAGGCGGCG
CCTCGCTGCATGAAGCGCTTGGCCGCTACCCCGTGCAGTTCGATGAGCTCTACTGCAACCTGGTACACGCTGGCGAAGCC
TCCGGTGTGCTGGATACGGTGCTGGACACCGTAGCCACGTACAAGGAACGCACCGAGGCGATCAAGAAGAAGATCAAAAA
AGCGCTGTTCTACCCGATGATGGTGTTGGCCGTGGTGTTCCTGGTCATGCTGATCATGCTGCTGTTCGTGGTGCCGGTGT
TCACCAAAACCTTCCAGGATGCCGGTGCCGACCTGCCCGCACCGACCCAGGTGTTGGTGAGCATGTCGGAGTTCATGCAG
AGCTACTGGTGGCTGGTGATCGGCATCATCATCGGCAGCATCACCGCGATCATCATGGCCAAGAAGCGTTCGCTGAAGTT
CGCCCACTTCCTCGACCGGCTGTCACTGAAAATGCCGGTGATGGGCAATATCATACGCAACTCCGCCATTGCCCGTTTTT
CACGCACGCTGGGCGTCACTTTCCGCGCCGGCGTGCCACTGGTCGAGGCGCTGGACGCCGTGGCCGGTGCCACCGGCAGC
ATCGTTTATGGTGACGCCGTGCGGCAGATGCGTGACGACATTTCGGTCGGCCATCAGCTGCAACTGGCGATGAAGCAGAC
CGGACTGTTCCCGAACATGGTGGTGCAGATGACCGCCATCGGTGAAGAATCCGGTGCACTGGACAACATGCTGTTCAAGG
TCGCCGAGTTCTACGAAGAAGAAGTGGAGAACGCGGTCGATACCCTGTCGACCCTGCTCGAGCCGATCATCATGGTCGTG
CTCGGCGGTATCGTCGGCGGCATGGTGGTGGCGCTGTACTTGCCGATCTTCAAACTCGCCGGCACGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.634

94.326

0.506
  pilC Pseudomonas stutzeri DSM 10701

52

94.563

0.492
  pilC Acinetobacter baylyi ADP1

48.78

96.927

0.473
  pilC Acinetobacter baumannii D1279779

49.25

94.563

0.466
  pilG Neisseria meningitidis 44/76-A

42.377

91.489

0.388
  pilG Neisseria gonorrhoeae MS11

42.377

91.489

0.388
  pilC Vibrio campbellii strain DS40M4

39.698

94.09

0.374
  pilC Vibrio cholerae strain A1552

38.987

93.381

0.364