Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PY250_RS15185 Genome accession   NZ_CP119334
Coordinates   3233032..3234141 (-) Length   369 a.a.
NCBI ID   WP_042523881.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3228032..3239141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY250_RS15155 (PY250_15155) hemF 3228493..3229410 (-) 918 WP_065274969.1 oxygen-dependent coproporphyrinogen oxidase -
  PY250_RS15160 (PY250_15160) - 3229458..3230015 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  PY250_RS15165 (PY250_15165) purE 3230215..3230700 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PY250_RS15170 (PY250_15170) - 3230705..3231838 (+) 1134 WP_213877845.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PY250_RS15175 (PY250_15175) - 3231904..3232473 (-) 570 WP_017821580.1 type I DNA topoisomerase -
  PY250_RS15180 (PY250_15180) - 3232550..3233029 (-) 480 WP_005379074.1 DUF494 family protein -
  PY250_RS15185 (PY250_15185) dprA 3233032..3234141 (-) 1110 WP_042523881.1 DNA-processing protein DprA Machinery gene
  PY250_RS15190 (PY250_15190) - 3234125..3235219 (-) 1095 WP_042523883.1 LysM peptidoglycan-binding domain-containing protein -
  PY250_RS15195 (PY250_15195) def 3235358..3235876 (+) 519 WP_005379068.1 peptide deformylase -
  PY250_RS15200 (PY250_15200) fmt 3235910..3236857 (+) 948 WP_017635609.1 methionyl-tRNA formyltransferase -
  PY250_RS15205 (PY250_15205) rsmB 3236938..3238221 (+) 1284 WP_017821576.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39978.70 Da        Isoelectric Point: 6.8191

>NTDB_id=798567 PY250_RS15185 WP_042523881.1 3233032..3234141(-) (dprA) [Vibrio alginolyticus strain 2-1]
MNRRNNDDLDAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPCYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=798567 PY250_RS15185 WP_042523881.1 3233032..3234141(-) (dprA) [Vibrio alginolyticus strain 2-1]
ATGAATCGACGAAATAACGATGATCTCGATGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGTTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGTGTTATCCACCTCAGCTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAATCCTACTTGTCTTTCTCAGCCACAAATCGCGATGGTTGGAAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGCAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACACGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.927

100

0.829
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379