Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PY372_RS15805 Genome accession   NZ_CP119301
Coordinates   3355031..3356143 (-) Length   370 a.a.
NCBI ID   WP_025499981.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3350031..3361143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS15775 (PY372_15945) hemF 3350492..3351409 (-) 918 WP_062852399.1 oxygen-dependent coproporphyrinogen oxidase -
  PY372_RS15780 (PY372_15950) - 3351457..3352014 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  PY372_RS15785 (PY372_15955) purE 3352214..3352699 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PY372_RS15790 (PY372_15960) - 3352704..3353831 (+) 1128 WP_029847707.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PY372_RS15795 (PY372_15965) - 3353901..3354470 (-) 570 WP_025503761.1 type I DNA topoisomerase -
  PY372_RS15800 (PY372_15970) - 3354549..3355028 (-) 480 WP_005461440.1 DUF494 family protein -
  PY372_RS15805 (PY372_15975) dprA 3355031..3356143 (-) 1113 WP_025499981.1 DNA-processing protein DprA Machinery gene
  PY372_RS15810 (PY372_15980) - 3356127..3357221 (-) 1095 WP_062852400.1 LysM peptidoglycan-binding domain-containing protein -
  PY372_RS15815 (PY372_15985) def 3357360..3357878 (+) 519 WP_005461416.1 peptide deformylase -
  PY372_RS15820 (PY372_15990) fmt 3357912..3358859 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  PY372_RS15825 (PY372_15995) rsmB 3358940..3360223 (+) 1284 WP_062852403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39950.58 Da        Isoelectric Point: 6.5005

>NTDB_id=798413 PY372_RS15805 WP_025499981.1 3355031..3356143(-) (dprA) [Vibrio parahaemolyticus strain LC]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=798413 PY372_RS15805 WP_025499981.1 3355031..3356143(-) (dprA) [Vibrio parahaemolyticus strain LC]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTAGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.875

100

0.411
  dprA Neisseria meningitidis MC58

38.875

100

0.411
  dprA Neisseria gonorrhoeae MS11

36.761

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

36.504

100

0.384