Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PZY29_RS16660 Genome accession   NZ_CP119296
Coordinates   3587535..3588773 (-) Length   412 a.a.
NCBI ID   WP_016611658.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain ASE2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3582535..3593773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZY29_RS16640 (PZY29_16640) pgmB 3582848..3583498 (+) 651 WP_005232889.1 beta-phosphoglucomutase -
  PZY29_RS16645 (PZY29_16645) treR 3583553..3584269 (+) 717 WP_005226457.1 trehalose operon repressor -
  PZY29_RS16650 (PZY29_16650) rny 3584572..3586146 (-) 1575 WP_005232891.1 ribonuclease Y -
  PZY29_RS16655 (PZY29_16655) recA 3586389..3587432 (-) 1044 WP_008376737.1 recombinase RecA Machinery gene
  PZY29_RS16660 (PZY29_16660) cinA 3587535..3588773 (-) 1239 WP_016611658.1 competence/damage-inducible protein A Machinery gene
  PZY29_RS16665 (PZY29_16665) pgsA 3588901..3589482 (-) 582 WP_005232894.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PZY29_RS16670 (PZY29_16670) - 3589615..3590517 (-) 903 WP_005232895.1 helix-turn-helix domain-containing protein -
  PZY29_RS16675 (PZY29_16675) - 3590982..3592280 (-) 1299 WP_005232896.1 pitrilysin family protein -
  PZY29_RS16680 (PZY29_16680) - 3592273..3593541 (-) 1269 WP_016611660.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44751.73 Da        Isoelectric Point: 4.5151

>NTDB_id=798266 PZY29_RS16660 WP_016611658.1 3587535..3588773(-) (cinA) [Enterococcus casseliflavus strain ASE2]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSQRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIEQLDALE
ETVQARVGAYFYGYGEQNSLAETVVDLLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFSGGFVTYSAGTKSKLLGIDS
ALLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=798266 PZY29_RS16660 WP_016611658.1 3587535..3588773(-) (cinA) [Enterococcus casseliflavus strain ASE2]
ATGAAAGCAGAAATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCGACCTTCTTGTCAGA
AGAACTGGCAAGTCTAGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAGGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTGCTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCGCGCCATGTGGGACAGGAATTAGTGCGAGATGAACCAGGTTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCA
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCTTAGTCTTCAAAGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATTTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCGCCAAGTGAACTGCAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAAGTCTTGCTTTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCGTTGGTCACAGAATTGGCCGATTTGATCGAGAACCAAGTCAATCCCACCATCGCCCCTTATGCCA
AACCCAATGAGGTCACATTGCGTCTGACGGTCAAAACCGCAGATGAGGCGCAAGGAATCGAACAATTGGATGCATTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGATATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGATCT
ACTAATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTTCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTTCCGGTGGGTTCGTGACATATTCTGCTGGAACAAAAAGCAAGCTCTTAGGCATCGATTCA
GCGCTTTTAGAAAGCTATGGGACTGTTAGTCAGGAGTGTGCGGAAGCAATGGCCGTCTATGCCCGCAAACAAGCAGAGAC
CGATTATGCGGTGGCCTTCACCGGTGTTGCTGGTCCAGACGAACTAGAAGGCCAGCCCAAAGGCACTGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCAAGCCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCTGTCATG
GCAGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.355

100

0.517
  cinA Streptococcus mitis SK321

50.118

100

0.515
  cinA Streptococcus pneumoniae D39

50.118

100

0.515
  cinA Streptococcus pneumoniae Rx1

50.118

100

0.515
  cinA Streptococcus pneumoniae R6

50.118

100

0.515
  cinA Streptococcus mitis NCTC 12261

49.645

100

0.51
  cinA Streptococcus mutans UA159

50.24

100

0.507
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

42.995

100

0.432