Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PY247_RS03420 Genome accession   NZ_CP119223
Coordinates   744869..746095 (+) Length   408 a.a.
NCBI ID   WP_004656216.1    Uniprot ID   A0A653K663
Organism   Acinetobacter proteolyticus strain AP54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 739869..751095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY247_RS03385 (PY247_03385) rimP 740475..740999 (-) 525 WP_004656212.1 ribosome maturation factor RimP -
  PY247_RS03405 (PY247_03405) secG 741626..741955 (-) 330 WP_004656213.1 preprotein translocase subunit SecG -
  PY247_RS03410 (PY247_03410) tpiA 741968..742759 (-) 792 WP_159725454.1 triose-phosphate isomerase -
  PY247_RS03415 (PY247_03415) pilB 743132..744844 (+) 1713 WP_159725455.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PY247_RS03420 (PY247_03420) pilC 744869..746095 (+) 1227 WP_004656216.1 type II secretion system F family protein Machinery gene
  PY247_RS03425 (PY247_03425) - 746109..746962 (+) 854 Protein_665 A24 family peptidase -
  PY247_RS03430 (PY247_03430) coaE 746964..747569 (+) 606 WP_004656219.1 dephospho-CoA kinase -
  PY247_RS03435 (PY247_03435) - 747566..748477 (-) 912 WP_101235316.1 DMT family transporter -
  PY247_RS03440 (PY247_03440) rlmB 748507..749253 (-) 747 WP_065343633.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PY247_RS03445 (PY247_03445) - 749388..749714 (-) 327 WP_004656225.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44979.51 Da        Isoelectric Point: 9.8061

>NTDB_id=798207 PY247_RS03420 WP_004656216.1 744869..746095(+) (pilC) [Acinetobacter proteolyticus strain AP54]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVEMSKWMQEYWFILIIVIGAIIA
SFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=798207 PY247_RS03420 WP_004656216.1 744869..746095(+) (pilC) [Acinetobacter proteolyticus strain AP54]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTCGACCGGAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTGGCTAAAGTTACCCTGCGTAAACAAGGGGTAACTATCAAGAACATTCGGGAAAAGC
GTAAAAACATTCTCGAAGGCTTGATGAAGAAAAAAGTCACCACACTGGATATCACGATCTTCACTCGCCAATTGGCCACG
ATGATGAAAGCAGGTGTCCCCTTGGTTCAAGGCTTTGAAATTGTGGCTGAAGGGCTTGAAAACCCCGCCATGCGCGAAGT
CGTTTTGGGCATTAAAGGTGAGGTCGAAGGCGGTAATACCTTTGCTGGGGCGCTGAAAAAATATCCACAATATTTTGATA
ACCTATTTTGCTCTCTGGTTGAATCCGGTGAACAGTCTGGTGCGCTTGAAACCATGCTTGATCGGGTCGCGATTTATAAA
GAGAAGAGTGAATTACTGAAACAGAAAATTAAAAAAGCCATGAAATACCCAATCACAGTTGTTGTGGTTGCTGTGATTGT
GACAATTATTTTGATGGTCAAAGTGGTTCCCGTTTTCCAAGATCTATTTAGCTCTTTTGGTGCAGATCTACCCGCATTTA
CTAAAATGGTTGTAGAGATGTCCAAATGGATGCAGGAATACTGGTTTATTCTAATTATTGTGATTGGTGCCATTATTGCA
TCCTTTCTTGAAGCCAAAAAACGGAGTAAAAAATTCCGTGACTTATTAGATAAAATGGCACTCAAAGCACCTATTTTCGG
GGATTTGGTTTATAAAGCGATTATCGCGCGTTATAGTCGCACCTTGGCGACAACCTTTGCCGCAGGTGTCCCACTGATTG
ATGCACTGGAATCTACTGCTGGCGCAACCAATAATGTTATTTATGAAGAAGCCGTGATGAAAATCCGAGAAGATGTCGCA
ACGGGGCAACAGCTACAGTTCGCAATGCGAGTTTCAAACCGCTTCCCTTCTATGGCGATTCAGATGGTGGCGATTGGCGA
GGAATCCGGTGCTTTAGACAGTATGCTCGATAAAGTCGCGACACATTATGAAAATGAAGTTGACAATGCCGTTGATGGCT
TAACCTCGATGATGGAACCTTTAATCATGGCAATTCTTGGGGTATTGGTCGGTGGTCTGGTGATTGCCATGTACTTACCA
ATTTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653K663

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

93.382

100

0.934
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

60.934

99.755

0.608
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404