Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QU709_RS28240 Genome accession   NZ_CP132593
Coordinates   6331396..6332076 (+) Length   226 a.a.
NCBI ID   WP_306501478.1    Uniprot ID   -
Organism   Streptomyces sp. YU58 strain SX92     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6326396..6337076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU709_RS28210 (QU709_28220) - 6326564..6327748 (-) 1185 WP_306501476.1 acyltransferase family protein -
  QU709_RS28215 (QU709_28225) - 6328248..6328442 (+) 195 WP_059191782.1 hypothetical protein -
  QU709_RS28230 (QU709_28240) tig 6329053..6330459 (+) 1407 WP_306501477.1 trigger factor -
  QU709_RS28235 (QU709_28245) clpP 6330740..6331345 (+) 606 WP_232027615.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QU709_RS28240 (QU709_28250) clpP 6331396..6332076 (+) 681 WP_306501478.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QU709_RS28245 (QU709_28255) clpX 6332260..6333546 (+) 1287 WP_232027459.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QU709_RS28250 (QU709_28260) - 6333640..6334596 (-) 957 WP_306501479.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24973.41 Da        Isoelectric Point: 4.6364

>NTDB_id=796824 QU709_RS28240 WP_306501478.1 6331396..6332076(+) (clpP) [Streptomyces sp. YU58 strain SX92]
MNDFPGSGLYDRTRAESTVPVAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTADDALAYGLIDQIISTRKMNNASVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=796824 QU709_RS28240 WP_306501478.1 6331396..6332076(+) (clpP) [Streptomyces sp. YU58 strain SX92]
GTGAACGACTTCCCCGGCAGCGGCCTGTACGACCGCACACGCGCCGAGAGCACGGTGCCGGTCGCCGAGTCCCGGTACGT
CATCCCCCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCCAAGCTCTTCGAAGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCTCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCCATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAAATCGCCGCGAACGAGATCCTGCGGATGCGCGCCCAGCTGGAAGACCTGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGATGACGCCCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCGAGCGTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

83.186

0.42
  clpP Streptococcus mutans UA159

44.828

89.823

0.403
  clpP Streptococcus thermophilus LMD-9

46.667

86.283

0.403
  clpP Streptococcus thermophilus LMG 18311

46.667

86.283

0.403
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Lactococcus lactis subsp. cremoris KW2

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.878

86.726

0.381