Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PYW30_RS09740 Genome accession   NZ_CP118950
Coordinates   1941394..1941888 (-) Length   164 a.a.
NCBI ID   WP_003133131.1    Uniprot ID   A0A1I4HNK8
Organism   Lactococcus garvieae subsp. garvieae strain DSM 20684     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1936394..1946888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW30_RS09710 recX 1936722..1937555 (+) 834 WP_042218977.1 recombination regulator RecX -
  PYW30_RS09715 - 1937638..1938486 (+) 849 WP_042218979.1 MurR/RpiR family transcriptional regulator -
  PYW30_RS09720 - 1938518..1938826 (+) 309 WP_014025499.1 DUF960 domain-containing protein -
  PYW30_RS09725 - 1938860..1939627 (-) 768 WP_042218981.1 metallophosphoesterase -
  PYW30_RS09730 - 1939711..1940919 (-) 1209 WP_042218983.1 hypothetical protein -
  PYW30_RS09735 rpsR 1941035..1941280 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  PYW30_RS09740 ssb 1941394..1941888 (-) 495 WP_003133131.1 single-stranded DNA-binding protein Machinery gene
  PYW30_RS09745 rpsF 1941926..1942219 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  PYW30_RS09750 - 1942411..1942623 (-) 213 WP_016171080.1 hypothetical protein -
  PYW30_RS09755 - 1943093..1944556 (+) 1464 WP_003133128.1 amino acid permease -
  PYW30_RS09760 dnaX 1944589..1946247 (-) 1659 WP_042218986.1 DNA polymerase III subunit gamma/tau -
  PYW30_RS09765 - 1946260..1946880 (-) 621 WP_042218989.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18003.88 Da        Isoelectric Point: 4.9533

>NTDB_id=796703 PYW30_RS09740 WP_003133131.1 1941394..1941888(-) (ssb) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNATPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=796703 PYW30_RS09740 WP_003133131.1 1941394..1941888(-) (ssb) [Lactococcus garvieae subsp. garvieae strain DSM 20684]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATATACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAGAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATGCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I4HNK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.585
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372