Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O6P42_RS17195 Genome accession   NZ_CP118930
Coordinates   3556496..3557605 (-) Length   369 a.a.
NCBI ID   WP_053350676.1    Uniprot ID   A0AAW7A1U6
Organism   Vibrio alginolyticus strain V208     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3551496..3562605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6P42_RS17165 (O6P42_17165) hemF 3551955..3552872 (-) 918 WP_047104448.1 oxygen-dependent coproporphyrinogen oxidase -
  O6P42_RS17170 (O6P42_17170) - 3552920..3553477 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  O6P42_RS17175 (O6P42_17175) purE 3553677..3554162 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  O6P42_RS17180 (O6P42_17180) - 3554167..3555300 (+) 1134 WP_115386375.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  O6P42_RS17185 (O6P42_17185) - 3555366..3555935 (-) 570 WP_115386376.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  O6P42_RS17190 (O6P42_17190) - 3556014..3556493 (-) 480 WP_031823674.1 DUF494 family protein -
  O6P42_RS17195 (O6P42_17195) dprA 3556496..3557605 (-) 1110 WP_053350676.1 DNA-processing protein DprA Machinery gene
  O6P42_RS17200 (O6P42_17200) - 3557589..3558683 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  O6P42_RS17205 (O6P42_17205) def 3558822..3559340 (+) 519 WP_005379068.1 peptide deformylase -
  O6P42_RS17210 (O6P42_17210) fmt 3559374..3560321 (+) 948 WP_115386377.1 methionyl-tRNA formyltransferase -
  O6P42_RS17215 (O6P42_17215) rsmB 3560402..3561685 (+) 1284 WP_017821576.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40045.77 Da        Isoelectric Point: 7.0083

>NTDB_id=796449 O6P42_RS17195 WP_053350676.1 3556496..3557605(-) (dprA) [Vibrio alginolyticus strain V208]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=796449 O6P42_RS17195 WP_053350676.1 3556496..3557605(-) (dprA) [Vibrio alginolyticus strain V208]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAACCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTGCTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTGCTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGCGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379