Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PX336_RS06655 Genome accession   NZ_CP118923
Coordinates   1369251..1370492 (-) Length   413 a.a.
NCBI ID   WP_053906123.1    Uniprot ID   -
Organism   Pediococcus acidilactici strain CLP03     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1364251..1375492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX336_RS06645 (PX336_06645) rny 1366197..1367756 (-) 1560 WP_053906124.1 ribonuclease Y -
  PX336_RS06650 (PX336_06650) recA 1368025..1369080 (-) 1056 WP_002832084.1 recombinase RecA Machinery gene
  PX336_RS06655 (PX336_06655) cinA 1369251..1370492 (-) 1242 WP_053906123.1 competence/damage-inducible protein A Machinery gene
  PX336_RS06660 (PX336_06660) pgsA 1370630..1371211 (-) 582 WP_053906122.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PX336_RS06665 (PX336_06665) - 1371224..1372102 (-) 879 WP_053906121.1 helix-turn-helix domain-containing protein -
  PX336_RS06670 (PX336_06670) - 1372145..1372870 (-) 726 WP_002832088.1 SDR family oxidoreductase -
  PX336_RS06675 (PX336_06675) - 1372887..1374179 (-) 1293 WP_053906120.1 pitrilysin family protein -
  PX336_RS06680 (PX336_06680) - 1374179..1375438 (-) 1260 WP_053906119.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44891.16 Da        Isoelectric Point: 5.3325

>NTDB_id=796356 PX336_RS06655 WP_053906123.1 1369251..1370492(-) (cinA) [Pediococcus acidilactici strain CLP03]
MKAEIISVGTEILLGEITDTNAVYLSQQLAQLGIDVYHQATVGDNSTTMKETLEIASKRSDLVIAIGGLGPTEDDITKPT
LAAFLGEELVVDDRALEKVHEHFTKQGRPITPNNERQALLLKGSRPVHNPNGLAIGLFATTPTTDYLVLPGPPSEFKPMV
NQEVLPLLKERYSLDKTIQSKTLHFVGVGEADLATRVDDVIRRQSNPTIALYFKPTDVTIRLTAKADSKDEAEQMLEKTK
AEILARAGDYYYAEGEQVAFPDFVVQELIKRKLTLTAAESLTGGAFQNQLVKTAGTSAVFSGGFVTYSDEVKTSLLGVRP
ETIAQYTVVSRPVAEEMARGARKQLGTDLAISFTGVAGPEGLEGHAPGDVWIGLALPDGSTVAKGFHFSGNREKIRHLAV
MNGFRMIWEQVVK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=796356 PX336_RS06655 WP_053906123.1 1369251..1370492(-) (cinA) [Pediococcus acidilactici strain CLP03]
ATGAAGGCGGAAATTATTTCAGTTGGTACCGAGATTTTGTTAGGTGAAATCACCGATACTAACGCCGTTTATTTGAGTCA
GCAATTAGCCCAGCTAGGAATTGACGTTTATCACCAAGCAACGGTGGGCGATAATTCAACTACCATGAAGGAAACGCTGG
AAATTGCCAGCAAGCGCAGCGACTTAGTGATCGCCATTGGGGGATTAGGACCGACGGAAGATGATATTACTAAACCAACG
TTGGCCGCGTTTTTAGGTGAAGAATTAGTGGTTGACGACCGGGCGCTAGAAAAGGTGCACGAGCACTTTACTAAGCAGGG
ACGTCCCATCACTCCCAATAATGAACGGCAGGCGTTGTTATTAAAAGGGAGTCGTCCTGTGCACAATCCCAACGGGTTAG
CGATTGGCTTGTTTGCCACTACTCCGACGACCGATTACTTGGTTTTACCAGGACCGCCTAGTGAATTTAAGCCAATGGTT
AACCAGGAAGTGCTTCCTTTGTTAAAAGAGCGGTACTCGTTGGATAAAACAATTCAATCCAAAACGTTACACTTCGTAGG
GGTTGGGGAAGCCGACTTGGCGACCCGGGTGGATGACGTGATCAGACGACAGAGTAATCCTACAATCGCGTTATACTTCA
AACCGACTGACGTAACCATCCGACTAACTGCGAAGGCGGATTCTAAAGATGAAGCAGAACAAATGTTAGAAAAAACCAAG
GCAGAAATCCTTGCTCGAGCAGGCGATTATTACTATGCTGAAGGTGAACAGGTCGCTTTTCCAGATTTTGTAGTACAAGA
ATTAATCAAACGAAAACTAACGTTAACGGCAGCAGAAAGTTTGACTGGTGGTGCTTTCCAAAATCAATTAGTAAAAACAG
CGGGTACTTCCGCAGTATTTTCGGGAGGCTTTGTAACGTATTCTGATGAAGTAAAAACTAGTTTATTGGGGGTTCGTCCG
GAAACTATCGCTCAATACACGGTGGTAAGTCGTCCGGTTGCTGAAGAGATGGCGCGCGGGGCACGAAAGCAATTAGGTAC
GGACCTAGCGATTAGCTTTACTGGAGTAGCGGGACCTGAAGGATTAGAAGGACACGCGCCTGGTGACGTATGGATTGGGT
TGGCGTTGCCAGATGGAAGTACCGTGGCTAAGGGGTTCCATTTTAGCGGTAACCGGGAAAAAATCCGCCATTTAGCAGTA
ATGAATGGTTTTCGAATGATTTGGGAACAAGTGGTTAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.156

100

0.482
  cinA Streptococcus mitis NCTC 12261

46.682

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.445

100

0.475
  cinA Streptococcus pneumoniae Rx1

45.972

100

0.47
  cinA Streptococcus pneumoniae R6

45.972

100

0.47
  cinA Streptococcus pneumoniae D39

45.735

100

0.467
  cinA Streptococcus mutans UA159

46.043

100

0.465
  cinA Bacillus subtilis subsp. subtilis str. 168

42.118

98.305

0.414
  cinA Streptococcus suis isolate S10

40.146

99.516

0.4