Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PWO93_RS09635 Genome accession   NZ_CP118745
Coordinates   2060045..2061307 (-) Length   420 a.a.
NCBI ID   WP_251897386.1    Uniprot ID   -
Organism   Lactiplantibacillus paraplantarum strain FL-8     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2055045..2066307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWO93_RS09620 (PWO93_09620) - 2056099..2056905 (-) 807 WP_021732543.1 TIGR00282 family metallophosphoesterase -
  PWO93_RS09625 (PWO93_09625) rny 2057028..2058587 (-) 1560 WP_021732544.1 ribonuclease Y -
  PWO93_RS09630 (PWO93_09630) recA 2058817..2059953 (-) 1137 WP_021732545.1 recombinase RecA Machinery gene
  PWO93_RS09635 (PWO93_09635) cinA 2060045..2061307 (-) 1263 WP_251897386.1 competence/damage-inducible protein A Machinery gene
  PWO93_RS09640 (PWO93_09640) pgsA 2061503..2062087 (-) 585 WP_021732547.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PWO93_RS09645 (PWO93_09645) - 2062110..2062982 (-) 873 WP_021732548.1 helix-turn-helix domain-containing protein -
  PWO93_RS09650 (PWO93_09650) yfmH 2063086..2064387 (-) 1302 WP_275090795.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PWO93_RS09655 (PWO93_09655) yfmF 2064384..2065649 (-) 1266 WP_275090796.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 44913.40 Da        Isoelectric Point: 6.9815

>NTDB_id=794955 PWO93_RS09635 WP_251897386.1 2060045..2061307(-) (cinA) [Lactiplantibacillus paraplantarum strain FL-8]
MQAEIIAVGTEILLGQITNTNSTYIAQGLAELGIDSYYQTVVGDNPQRLSAVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAQYLNVALVESPSAMQKITAWFATNGKTMTANNRLQALYPDGAVPLTNHNGMAVGAFYQSVDSADFLLLPGPPRELTMM
FDTEAKPKLAAAYGRQAQIYSRVMRFYGISESELVTKLQPLIDGQTKVTIAPYAKTNEVTLRLSAQAVTERVAKTMIDTV
DQQIKACVGTFFYGYGDDNSLVTTVIKQMIAAKLSLTAAESLTAGLFQSTIGSVAGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDTDGVVSKTTAQAMAVGAKKQLNTAVGVSFTGVAGPGTLEGQVAGTVWIGLAYRNQPVVAHQYHFAGNRQQIRERS
VMAGLDLLRHALNADMDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=794955 PWO93_RS09635 WP_251897386.1 2060045..2061307(-) (cinA) [Lactiplantibacillus paraplantarum strain FL-8]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGACAGATTACAAATACGAATAGTACTTATATCGCACA
AGGATTGGCTGAATTAGGAATTGATAGTTATTATCAGACGGTGGTCGGTGACAATCCGCAACGGTTATCGGCCGTGATTG
AAATTGCGGCCCAACGGAATGATCTCGTCATTTTGACGGGGGGACTAGGACCAACGAAAGATGATTTAACCAAACAGACC
CTCGCACAATATTTAAACGTGGCGTTGGTTGAGTCGCCATCAGCGATGCAAAAGATTACGGCTTGGTTTGCAACTAATGG
TAAGACAATGACTGCTAATAACCGGTTACAAGCATTATATCCTGATGGTGCGGTGCCGTTGACTAATCACAATGGGATGG
CGGTTGGGGCTTTTTATCAGTCTGTGGATAGTGCTGATTTCTTGTTGCTGCCGGGACCGCCCCGCGAATTGACTATGATG
TTTGATACTGAAGCTAAGCCGAAATTGGCCGCGGCATACGGGCGACAGGCACAAATTTATTCGCGAGTGATGCGCTTTTA
TGGTATCAGTGAGTCTGAACTGGTTACTAAGTTGCAGCCATTGATTGATGGCCAGACTAAAGTGACAATCGCACCGTATG
CCAAGACTAACGAGGTGACGTTACGCCTGAGTGCCCAAGCAGTGACTGAGAGGGTAGCCAAGACGATGATTGATACGGTG
GACCAGCAAATTAAAGCTTGTGTGGGGACCTTCTTTTACGGTTATGGTGATGATAATTCGTTAGTGACAACGGTTATTAA
GCAAATGATTGCGGCTAAGTTGAGTCTTACGGCTGCGGAAAGTTTAACGGCCGGACTATTTCAGAGCACGATCGGTAGTG
TAGCCGGTGTCTCAGCAATCTTTCCGGGTGGCTTTGTCACGTATGCCAATGAAGCTAAGCATCAGTTAGTCAATGTGCCG
CAAGCAATTATTGATACCGATGGGGTAGTTTCTAAAACGACTGCTCAAGCCATGGCAGTGGGAGCCAAAAAACAATTAAA
TACTGCAGTGGGCGTGAGCTTTACTGGTGTTGCGGGGCCGGGGACACTTGAAGGTCAAGTTGCTGGGACCGTCTGGATCG
GCTTAGCCTATCGCAATCAACCCGTTGTTGCTCACCAGTATCATTTTGCTGGTAACCGGCAACAGATCCGTGAGCGCAGT
GTGATGGCTGGTTTAGACTTATTGCGGCATGCTTTAAACGCGGATATGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R6

47.877

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.877

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.877

100

0.483
  cinA Streptococcus pneumoniae D39

47.642

100

0.481
  cinA Streptococcus mitis SK321

47.754

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.045

100

0.474
  cinA Streptococcus mutans UA159

45.131

100

0.452
  cinA Bacillus subtilis subsp. subtilis str. 168

45.7

96.905

0.443
  cinA Streptococcus suis isolate S10

38.462

99.048

0.381