Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   PYG29_RS01660 Genome accession   NZ_CP118686
Coordinates   371889..373121 (-) Length   410 a.a.
NCBI ID   WP_100121065.1    Uniprot ID   -
Organism   Snodgrassella communis strain B10998     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366889..378121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYG29_RS01625 (PYG29_01630) - 367436..367684 (-) 249 WP_239423039.1 BolA family protein -
  PYG29_RS01630 (PYG29_01635) - 367741..368502 (-) 762 WP_239423040.1 ABC transporter permease -
  PYG29_RS01635 (PYG29_01640) - 368499..369416 (-) 918 WP_239423041.1 ABC transporter ATP-binding protein -
  PYG29_RS01640 (PYG29_01645) yacG 369465..369662 (-) 198 WP_239423042.1 DNA gyrase inhibitor YacG -
  PYG29_RS01645 (PYG29_01650) zapD 369662..370423 (-) 762 WP_239423043.1 cell division protein ZapD -
  PYG29_RS01650 (PYG29_01655) coaE 370420..371034 (-) 615 WP_100101728.1 dephospho-CoA kinase -
  PYG29_RS01655 (PYG29_01660) pilD 371031..371882 (-) 852 WP_239423045.1 A24 family peptidase Machinery gene
  PYG29_RS01660 (PYG29_01665) pilG 371889..373121 (-) 1233 WP_100121065.1 type II secretion system F family protein Machinery gene
  PYG29_RS01665 (PYG29_01670) pilF 373170..374849 (-) 1680 WP_239423046.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PYG29_RS01670 (PYG29_01675) recJ 375056..376753 (-) 1698 WP_309618753.1 single-stranded-DNA-specific exonuclease RecJ -
  PYG29_RS01675 (PYG29_01680) - 376750..377721 (-) 972 WP_239423047.1 hypothetical protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45178.31 Da        Isoelectric Point: 9.9922

>NTDB_id=794350 PYG29_RS01660 WP_100121065.1 371889..373121(-) (pilG) [Snodgrassella communis strain B10998]
MNKPVAVSKTKPAGITFSFEGKNLKTEQIVRGEVVAKNEAEARAKLSRRQIRVIQITKLKKRRQKKISQADITIFTRQLS
TMMKSGLPLMQAFDIAAKGHANPSMTQLLTEIRTDVEQGTSLADSFSKHPKYFDDFYCNLVRAGEAGGVLEGLLDKLAVY
KEKTQSIKKKVKSALTYPVVVVIVAIALVFVMMMFVLPSFAKVYSGMGVPLPGLTQVMMNISDFFVHYGIFILIALIIAG
IGFHKWFQNSADLRKRFDHMLLKLPIFGQIVRKATIARWSRTMATLFAAGVPLVEVLDSVAGAAGNIEYEEATQEIRTKV
NQGISLTSAMQATELFPNMVMQMASIGEESGSLDSMLNKAAEFYEDDVDTAVSQLSSLMEPIIMVVLGLIIGVILVAMYL
PMFNMGNAIG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=794350 PYG29_RS01660 WP_100121065.1 371889..373121(-) (pilG) [Snodgrassella communis strain B10998]
ATGAATAAACCAGTAGCAGTATCCAAAACCAAACCCGCCGGGATCACTTTCAGTTTTGAAGGTAAAAACCTTAAAACAGA
ACAGATTGTGCGCGGGGAAGTAGTTGCAAAAAATGAAGCTGAAGCTCGTGCCAAGCTGAGCCGGCGTCAGATTCGCGTTA
TTCAAATTACCAAGCTCAAGAAACGGCGTCAGAAGAAAATCAGTCAGGCGGATATCACTATTTTTACACGACAGTTATCC
ACCATGATGAAATCTGGCTTACCATTAATGCAAGCATTTGATATTGCTGCCAAAGGCCATGCTAATCCATCCATGACTCA
GTTACTGACAGAAATTCGTACAGATGTTGAGCAAGGAACGTCCCTGGCAGATTCTTTCTCCAAACATCCAAAATATTTTG
ATGATTTCTACTGTAATCTGGTGCGTGCCGGTGAAGCTGGCGGTGTACTGGAAGGTCTATTAGACAAACTGGCAGTGTAT
AAAGAAAAAACCCAAAGTATCAAGAAAAAAGTTAAAAGTGCCCTAACTTACCCAGTTGTTGTCGTTATTGTTGCCATAGC
ACTGGTTTTTGTCATGATGATGTTTGTACTGCCCTCTTTTGCCAAGGTATATTCAGGCATGGGCGTACCGTTGCCTGGCT
TAACTCAGGTTATGATGAATATCTCTGACTTTTTCGTGCATTATGGCATCTTTATTCTTATAGCATTGATTATTGCGGGA
ATTGGCTTTCATAAATGGTTTCAAAACTCGGCAGACCTGCGAAAACGCTTTGATCATATGTTGTTAAAGCTGCCTATCTT
TGGGCAAATTGTGCGTAAGGCAACCATAGCACGCTGGTCTCGCACTATGGCCACTCTGTTTGCTGCTGGTGTACCATTGG
TAGAAGTATTGGACTCGGTAGCGGGAGCAGCAGGTAATATTGAATATGAGGAAGCGACTCAGGAGATCCGTACCAAGGTA
AATCAGGGTATTTCACTAACCTCAGCCATGCAGGCAACAGAGCTATTCCCTAATATGGTCATGCAAATGGCTTCTATCGG
GGAAGAATCCGGTTCACTGGATTCCATGCTGAATAAGGCCGCTGAATTTTATGAAGACGATGTAGATACAGCTGTTTCAC
AATTATCTTCACTCATGGAACCTATCATCATGGTGGTACTAGGTCTGATTATCGGTGTCATTCTAGTAGCCATGTATTTA
CCAATGTTCAATATGGGCAATGCTATAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

67.43

95.854

0.646
  pilG Neisseria meningitidis 44/76-A

66.667

95.854

0.639
  pilC Legionella pneumophila strain ERS1305867

46.699

99.756

0.466
  pilC Acinetobacter baumannii D1279779

44.612

97.317

0.434
  pilC Acinetobacter baylyi ADP1

44.612

97.317

0.434
  pilC Pseudomonas stutzeri DSM 10701

43.108

97.317

0.42
  pilC Vibrio cholerae strain A1552

38.903

97.805

0.38