Detailed information NTG0794349

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PYG29_RS01655
• Genome accession: NZ_CP118686
• Coordinates: 371031..371882 (-)
• Length: 283 a.a.
• NCBI ID: WP_239423045.1
• Uniprot ID: -
• Organism: Snodgrassella communis strain B10998
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 366031..376882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PYG29_RS01620 (PYG29_01625)	murA	366141..367397 (-)	1257	WP_309618752.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
PYG29_RS01625 (PYG29_01630)	-	367436..367684 (-)	249	WP_239423039.1	BolA family protein	-
PYG29_RS01630 (PYG29_01635)	-	367741..368502 (-)	762	WP_239423040.1	ABC transporter permease	-
PYG29_RS01635 (PYG29_01640)	-	368499..369416 (-)	918	WP_239423041.1	ABC transporter ATP-binding protein	-
PYG29_RS01640 (PYG29_01645)	yacG	369465..369662 (-)	198	WP_239423042.1	DNA gyrase inhibitor YacG	-
PYG29_RS01645 (PYG29_01650)	zapD	369662..370423 (-)	762	WP_239423043.1	cell division protein ZapD	-
PYG29_RS01650 (PYG29_01655)	coaE	370420..371034 (-)	615	WP_100101728.1	dephospho-CoA kinase	-
PYG29_RS01655 (PYG29_01660)	pilD	371031..371882 (-)	852	WP_239423045.1	A24 family peptidase	Machinery gene
PYG29_RS01660 (PYG29_01665)	pilG	371889..373121 (-)	1233	WP_100121065.1	type II secretion system F family protein	Machinery gene
PYG29_RS01665 (PYG29_01670)	pilF	373170..374849 (-)	1680	WP_239423046.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PYG29_RS01670 (PYG29_01675)	recJ	375056..376753 (-)	1698	WP_309618753.1	single-stranded-DNA-specific exonuclease RecJ	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31183.21 Da
• Isoelectric Point: 8.1549

>NTDB_id=794349 PYG29_RS01655 WP_239423045.1 371031..371882(-) (pilD) [Snodgrassella communis strain B10998]
MLTDTLFFSAVALILGFAVGSFLNVVIYRLPIMMERSWQTEARMALQLPVENSTRFNLCVPPSACPHCQHKIRWWQNIPL
LSYLILRGRCAACTVPISPRYFCVELVTGLAFAAVVWHYDVTSVATGGLILTAALIALTFIDADTQLLPDQITLPLLWLG
LLFNWYCEFVPLSAAVWGAALGYLSLWSLFWLFKLLTGKDGMGYGDFKLLAALGAWMGAAALPLIVFMAAIVGIIASVIL
KVARSQPMAFGPALAIAGWVVWMANSQINQLIHWWLRLSGFGA

Nucleotide

• Length: 852 bp

>NTDB_id=794349 PYG29_RS01655 WP_239423045.1 371031..371882(-) (pilD) [Snodgrassella communis strain B10998]
ATGTTAACTGATACTCTGTTTTTTAGCGCAGTCGCATTAATATTGGGTTTTGCGGTTGGCAGCTTTCTGAATGTTGTGAT
CTATCGCTTACCCATCATGATGGAAAGAAGTTGGCAGACTGAGGCACGGATGGCACTACAACTGCCAGTAGAAAATTCTA
CCCGCTTTAATCTGTGTGTACCCCCTTCAGCCTGCCCACACTGCCAGCATAAAATTCGCTGGTGGCAGAATATACCTCTG
CTAAGCTATCTAATTTTGCGCGGTCGCTGTGCCGCATGTACCGTACCAATCAGTCCCCGCTACTTTTGTGTAGAACTCGT
AACTGGTCTGGCTTTTGCCGCAGTAGTCTGGCATTATGATGTTACGTCTGTAGCAACAGGTGGTCTAATACTGACTGCTG
CACTGATTGCACTCACCTTTATTGATGCTGACACCCAGCTCTTGCCAGACCAAATTACCTTGCCACTATTGTGGCTCGGT
TTACTGTTTAACTGGTACTGTGAGTTTGTTCCCTTATCTGCTGCCGTCTGGGGTGCCGCTCTGGGCTATCTAAGCTTATG
GTCTCTTTTTTGGTTATTCAAATTGTTAACCGGCAAAGATGGCATGGGCTATGGCGATTTTAAACTACTGGCTGCACTTG
GTGCCTGGATGGGAGCCGCAGCATTGCCATTAATTGTGTTCATGGCCGCAATTGTCGGCATTATTGCCTCTGTTATCCTC
AAAGTTGCCCGCAGCCAGCCAATGGCTTTCGGCCCGGCTCTGGCCATTGCCGGCTGGGTTGTATGGATGGCAAACAGTCA
GATTAACCAGCTGATTCACTGGTGGTTGCGTCTTTCTGGATTCGGTGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (130-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	54.779	96.113	0.526
pilD	Acinetobacter baumannii D1279779	52.03	95.76	0.498
pilD	Acinetobacter nosocomialis M2	51.661	95.76	0.495
pilD	Vibrio cholerae strain A1552	50.36	98.233	0.495
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449