Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IGS56_RS03620 | Genome accession | NZ_AP022846 |
| Coordinates | 718304..718753 (+) | Length | 149 a.a. |
| NCBI ID | WP_103708055.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain TAMBA230 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 713304..723753
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGS56_RS03600 (JPHIA_06880) | rsmE | 713769..714506 (-) | 738 | WP_014550478.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| IGS56_RS03605 (JPHIA_06890) | lnt | 714556..716085 (-) | 1530 | WP_080481790.1 | apolipoprotein N-acyltransferase | - |
| IGS56_RS03610 (JPHIA_06900) | corC | 716108..717007 (-) | 900 | WP_005656283.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| IGS56_RS03615 (JPHIA_06910) | ampD | 717638..718189 (-) | 552 | WP_071162800.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| IGS56_RS03620 (JPHIA_06920) | pilA | 718304..718753 (+) | 450 | WP_103708055.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| IGS56_RS03625 (JPHIA_06930) | pilB | 718750..720144 (+) | 1395 | WP_114877323.1 | GspE/PulE family protein | Machinery gene |
| IGS56_RS03630 (JPHIA_06940) | pilC | 720141..721358 (+) | 1218 | WP_167808414.1 | type II secretion system F family protein | Machinery gene |
| IGS56_RS03635 (JPHIA_06950) | pilD | 721355..722047 (+) | 693 | WP_114877327.1 | prepilin peptidase | Machinery gene |
| IGS56_RS03640 (JPHIA_06960) | rho | 722101..723363 (-) | 1263 | WP_005666690.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15683.22 Da Isoelectric Point: 9.3724
>NTDB_id=79415 IGS56_RS03620 WP_103708055.1 718304..718753(+) (pilA) [Haemophilus influenzae strain TAMBA230]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTKEITNCTGGKNGIA
ADIKTTKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVKK
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTKEITNCTGGKNGIA
ADIKTTKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVKK
Nucleotide
Download Length: 450 bp
>NTDB_id=79415 IGS56_RS03620 WP_103708055.1 718304..718753(+) (pilA) [Haemophilus influenzae strain TAMBA230]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCTTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCAC
CTTATAAGGCTGATGTGGAATTATGCGTTTATAGCACAAAGGAAATAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCGGATATAAAGACAACAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCAAAAAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCTTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCAC
CTTATAAGGCTGATGTGGAATTATGCGTTTATAGCACAAAGGAAATAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCGGATATAAAGACAACAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCAAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
95.973 |
100 |
0.96 |
| pilA | Haemophilus influenzae Rd KW20 |
90.604 |
100 |
0.906 |
| pilA | Glaesserella parasuis strain SC1401 |
54.73 |
99.329 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
42.177 |
98.658 |
0.416 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.497 |
98.658 |
0.409 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |