Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PVV54_RS01550 Genome accession   NZ_CP118607
Coordinates   370797..372065 (+) Length   422 a.a.
NCBI ID   WP_274908274.1    Uniprot ID   -
Organism   Pseudomonas sp. PSKL.D1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365797..377065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PVV54_RS01530 (PVV54_01530) - 365843..368296 (-) 2454 WP_274908271.1 penicillin-binding protein 1A -
  PVV54_RS01535 (PVV54_01535) pilM 368470..369330 (+) 861 WP_274908272.1 pilus assembly protein PilM -
  PVV54_RS01540 (PVV54_01540) - 369330..369866 (+) 537 WP_274910369.1 PilN domain-containing protein -
  PVV54_RS01545 (PVV54_01545) - 369857..370873 (+) 1017 WP_274908273.1 pilus assembly protein PilP -
  PVV54_RS01550 (PVV54_01550) pilQ 370797..372065 (+) 1269 WP_274908274.1 secretin N-terminal domain-containing protein Machinery gene
  PVV54_RS01555 (PVV54_01555) aroK 372070..372588 (+) 519 WP_274908275.1 shikimate kinase AroK -
  PVV54_RS01560 (PVV54_01560) aroB 372683..373780 (+) 1098 WP_274908276.1 3-dehydroquinate synthase -
  PVV54_RS01565 (PVV54_01565) - 373796..375382 (+) 1587 WP_274908277.1 AAA family ATPase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45995.80 Da        Isoelectric Point: 4.8260

>NTDB_id=793930 PVV54_RS01550 WP_274908274.1 370797..372065(+) (pilQ) [Pseudomonas sp. PSKL.D1]
MKWLTRWAAVAMMPIPLVMAEPHRAEPISLNFQDVEVRAVLQVLADYAGVNLVASDSVQGNVTLRLQDVSWEQALELVLR
SKGLARREEGNVLMVAPAAEMAQQSIGERIGSELDAQLQPLHRELLPIHHAKAAELAELLLVALADGESLSGRGSLSVDA
RTNTLVAYQPAERLAELRQLVAKLDVPVRQVAIEARIVEANVDYEKSLGVRWGGGLYEDAPRMGKDIFVDLGVERAGSGV
GLGLLRSDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSVSGATSVSFREASLSLEVTPQITPDG
KVIMDVRVTKDEPDFVNALNDVPPIRKNEVNAKVRVADGETIVIGGVYSTTQNKVVDKVPFFGDLPYVGRLFRRDALQEK
KSELLVFLTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=793930 PVV54_RS01550 WP_274908274.1 370797..372065(+) (pilQ) [Pseudomonas sp. PSKL.D1]
ATGAAATGGCTGACGAGGTGGGCAGCGGTGGCGATGATGCCCATACCGCTGGTGATGGCGGAGCCCCATCGGGCTGAGCC
GATATCGCTGAACTTCCAGGATGTGGAGGTGCGCGCTGTTCTGCAAGTGTTGGCCGATTACGCTGGCGTCAACCTGGTGG
CCAGTGACTCGGTGCAAGGAAATGTCACCCTTCGCTTGCAGGATGTTTCCTGGGAGCAGGCGCTGGAGCTCGTGTTGCGC
AGCAAAGGGTTGGCGCGGCGCGAAGAAGGGAACGTGCTAATGGTGGCGCCTGCGGCCGAAATGGCTCAACAGTCGATCGG
TGAGCGGATTGGGTCTGAACTGGATGCTCAGTTGCAGCCCTTGCACCGTGAATTGTTGCCGATTCATCACGCCAAGGCTG
CCGAGCTTGCCGAATTGTTGCTCGTGGCACTGGCCGATGGTGAGTCGCTCTCCGGGCGTGGCAGCTTGAGTGTGGATGCC
CGCACCAACACGCTTGTGGCCTATCAGCCCGCGGAGCGCCTTGCCGAGTTGAGGCAGTTGGTGGCCAAGCTGGACGTGCC
GGTCCGCCAGGTGGCGATTGAAGCCCGTATCGTGGAGGCCAACGTGGATTACGAGAAAAGCCTGGGTGTGCGATGGGGTG
GCGGCTTGTATGAAGATGCGCCGCGCATGGGCAAGGATATCTTTGTCGATCTGGGTGTCGAAAGGGCCGGCTCCGGTGTT
GGTCTTGGGCTATTGCGCAGTGATGTGCTGCTGGACCTGGAACTGAGCGCTATGGAAAAGAGCGGTAATGGCGAGATCAT
TTCCCAGCCCAAAGTGGTGACCGCCGACAAGGAAACCGCCCGGATTCTCAAGGGGACCGAGGTGCCTTACCAGGAAACCA
GCGTGAGCGGCGCTACCTCGGTTTCATTTCGCGAGGCTTCGTTGTCTTTGGAGGTTACCCCGCAAATTACGCCGGACGGT
AAGGTCATCATGGACGTGCGCGTGACCAAAGATGAGCCGGACTTCGTCAATGCCTTGAACGACGTGCCCCCAATCCGCAA
GAACGAGGTCAATGCCAAGGTCCGCGTAGCGGACGGTGAGACCATCGTGATTGGAGGCGTTTACTCGACCACGCAAAACA
AAGTGGTCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAA
AAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(125-190)

Secretin and TonB N terminus short domain (STN)

(51-97)

Bacterial type II and III secretion system protein (Secretin)

(257-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

58.257

100

0.602
  comQ Acinetobacter baylyi ADP1

41.463

100

0.443
  pilQ Acinetobacter baumannii D1279779

39.956

100

0.434
  pilQ Acinetobacter baumannii strain A118

39.956

100

0.434
  pilQ Legionella pneumophila strain Lp02

42.615

97.867

0.417
  pilQ Legionella pneumophila strain ERS1305867

42.615

97.867

0.417
  pilQ Vibrio campbellii strain DS40M4

40.802

100

0.41
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.346

98.578

0.408
  pilQ Vibrio cholerae strain A1552

41.346

98.578

0.408