Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PWW26_RS00080 Genome accession   NZ_CP118596
Coordinates   12051..13160 (-) Length   369 a.a.
NCBI ID   WP_038897980.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 7051..18160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW26_RS00050 hemF 7580..8497 (-) 918 WP_009702131.1 oxygen-dependent coproporphyrinogen oxidase -
  PWW26_RS00055 - 8532..9089 (-) 558 WP_050903741.1 L-threonylcarbamoyladenylate synthase -
  PWW26_RS00060 purE 9289..9774 (+) 486 WP_061065488.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWW26_RS00065 - 9779..10912 (+) 1134 WP_274878395.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWW26_RS00070 - 10976..11545 (-) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PWW26_RS00075 - 11569..12048 (-) 480 WP_005429833.1 DUF494 family protein -
  PWW26_RS00080 dprA 12051..13160 (-) 1110 WP_038897980.1 DNA-processing protein DprA Machinery gene
  PWW26_RS00085 - 13144..14238 (-) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  PWW26_RS00090 def 14377..14895 (+) 519 WP_005450979.1 peptide deformylase -
  PWW26_RS00095 fmt 14929..15876 (+) 948 WP_038897978.1 methionyl-tRNA formyltransferase -
  PWW26_RS00100 rsmB 15958..17241 (+) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39751.44 Da        Isoelectric Point: 6.0412

>NTDB_id=793777 PWW26_RS00080 WP_038897980.1 12051..13160(-) (dprA) [Vibrio harveyi strain fish10]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=793777 PWW26_RS00080 WP_038897980.1 12051..13160(-) (dprA) [Vibrio harveyi strain fish10]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAATTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAAAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.954

100

0.93
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.933

100

0.477
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371