Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PWW23_RS02185 Genome accession   NZ_CP118586
Coordinates   448271..449380 (+) Length   369 a.a.
NCBI ID   WP_017190971.1    Uniprot ID   -
Organism   Vibrio harveyi strain fish6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 443271..454380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWW23_RS02165 rsmB 444190..445473 (-) 1284 WP_005450981.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PWW23_RS02170 fmt 445555..446502 (-) 948 WP_009701851.1 methionyl-tRNA formyltransferase -
  PWW23_RS02175 def 446536..447054 (-) 519 WP_005450979.1 peptide deformylase -
  PWW23_RS02180 - 447193..448287 (+) 1095 WP_005450978.1 LysM peptidoglycan-binding domain-containing protein -
  PWW23_RS02185 dprA 448271..449380 (+) 1110 WP_017190971.1 DNA-processing protein DprA Machinery gene
  PWW23_RS02190 - 449383..449862 (+) 480 WP_274792331.1 DUF494 family protein -
  PWW23_RS02195 - 449886..450455 (+) 570 WP_274792330.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PWW23_RS02200 - 450519..451652 (-) 1134 WP_274792329.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PWW23_RS02205 purE 451657..452142 (-) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PWW23_RS02210 - 452342..452899 (+) 558 WP_017190968.1 L-threonylcarbamoyladenylate synthase -
  PWW23_RS02215 hemF 452934..453851 (+) 918 WP_009702131.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39733.41 Da        Isoelectric Point: 6.0412

>NTDB_id=793696 PWW23_RS02185 WP_017190971.1 448271..449380(+) (dprA) [Vibrio harveyi strain fish6]
MKLRNDTDLAAWLKLSCLPGIGGVKINKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=793696 PWW23_RS02185 WP_017190971.1 448271..449380(+) (dprA) [Vibrio harveyi strain fish6]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATAAA
TAAGCTGCTGAGCAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACTACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTATTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(314-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.919

100

0.591
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.48
  dprA Haemophilus influenzae Rd KW20

45

92.141

0.415
  dprA Legionella pneumophila strain ERS1305867

49.324

80.217

0.396
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.401

100

0.371